Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ICN83_RS05985 Genome accession   NZ_CP063839
Coordinates   1276029..1277390 (+) Length   453 a.a.
NCBI ID   WP_212598487.1    Uniprot ID   -
Organism   Sphingopyxis granuli strain RW412     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1271029..1282390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICN83_RS05965 (ICN83_05965) - 1271046..1272575 (+) 1530 WP_212598485.1 aldehyde dehydrogenase family protein -
  ICN83_RS05970 (ICN83_05970) - 1272700..1274202 (-) 1503 WP_420877560.1 acetyl-CoA acetyltransferase -
  ICN83_RS05975 (ICN83_05975) - 1274204..1275007 (-) 804 WP_212598486.1 enoyl-CoA hydratase-related protein -
  ICN83_RS05980 (ICN83_05980) fsa 1275191..1275841 (-) 651 WP_067106157.1 fructose-6-phosphate aldolase -
  ICN83_RS05985 (ICN83_05985) radA 1276029..1277390 (+) 1362 WP_212598487.1 DNA repair protein RadA Machinery gene
  ICN83_RS05990 (ICN83_05990) - 1277533..1278108 (+) 576 WP_212598488.1 CvpA family protein -
  ICN83_RS05995 (ICN83_05995) - 1278105..1278530 (+) 426 WP_067106163.1 iron-sulfur cluster assembly scaffold protein -
  ICN83_RS06000 (ICN83_06000) - 1278527..1280428 (+) 1902 WP_212598489.1 cation:proton antiporter -
  ICN83_RS06005 (ICN83_06005) aroB 1280483..1281586 (-) 1104 WP_212598490.1 3-dehydroquinate synthase -
  ICN83_RS06010 (ICN83_06010) - 1281574..1282137 (-) 564 WP_067187173.1 shikimate kinase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 47413.26 Da        Isoelectric Point: 6.2631

>NTDB_id=497028 ICN83_RS05985 WP_212598487.1 1276029..1277390(+) (radA) [Sphingopyxis granuli strain RW412]
MAKAKRQYVCQNCGAVSYRWQGQCADCGEWNTLVEEAAETVFSAKHDLSKGGRTLALETLDEQSAMPERMLCGIAEFDRA
LGGGFVAGSATLIGGDPGIGKSTLLLQAAGRIARAGKSVVYISGEEAAAQVRLRAQRLGLGDAPVALASATSVRDILATL
EGRGADFVVIDSIQTMHSDLIDSAPGTVSQVRASAQELIRYAKDSGAAIVLVGHVTKDGTIAGPRVLEHMVDTVLAFEGE
RSHQYRILRAVKNRFGGTDEIGVFAMGEEGLGEVANPSSLFLTDRSRDVPGSVVFPALEGTRPVLVEVQALTVRLASGAT
PRRAVVGWDSGRLAMVLAVLEARCGLQMGAAEVYLNIAGGYRLTDPAADLAVAAALISAFSERPVPADAIVFGELSLSGE
VRPVAHDALRLREAAKLGFSSGWGPKGMKGVKGIGVTGFGRLGELVDLMLGRA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=497028 ICN83_RS05985 WP_212598487.1 1276029..1277390(+) (radA) [Sphingopyxis granuli strain RW412]
ATGGCCAAAGCGAAACGCCAATATGTCTGCCAGAATTGCGGCGCCGTCAGCTATCGCTGGCAGGGCCAGTGCGCCGATTG
CGGCGAGTGGAACACGCTGGTCGAGGAAGCGGCCGAAACGGTCTTTTCCGCGAAGCACGACCTGTCGAAGGGCGGTCGCA
CGCTCGCGCTCGAAACGCTCGACGAACAGAGTGCGATGCCCGAGCGGATGCTGTGCGGCATCGCCGAGTTCGACCGCGCG
CTCGGCGGCGGCTTCGTCGCCGGGTCGGCGACGCTGATCGGCGGCGATCCGGGGATCGGCAAATCGACCTTGCTGCTTCA
GGCCGCGGGCCGGATCGCCAGGGCGGGCAAATCGGTCGTCTATATCAGCGGCGAGGAAGCGGCGGCGCAGGTGCGGCTGC
GCGCGCAGCGGCTGGGGCTCGGCGACGCGCCGGTGGCGCTCGCCAGCGCGACTTCGGTGCGCGACATCCTCGCCACGCTG
GAAGGCCGCGGCGCCGATTTTGTCGTCATCGATTCGATCCAGACGATGCACAGCGACCTGATCGACAGTGCGCCGGGTAC
CGTCAGCCAGGTGCGCGCGAGCGCGCAGGAACTGATCCGCTATGCCAAGGACAGCGGCGCGGCGATCGTGCTCGTCGGCC
ATGTGACGAAGGACGGGACGATCGCGGGACCGCGCGTGCTTGAGCATATGGTCGACACCGTGCTGGCGTTCGAGGGCGAG
CGCAGCCACCAGTATCGCATCCTGCGCGCGGTCAAGAACCGCTTTGGCGGCACCGACGAGATCGGGGTGTTCGCGATGGG
CGAGGAGGGGCTGGGCGAGGTCGCCAACCCGTCGAGCCTGTTCCTGACCGACCGCAGCCGCGACGTGCCGGGGTCGGTGG
TATTCCCCGCGCTGGAGGGCACGCGGCCGGTGCTGGTCGAGGTACAGGCGCTGACCGTCCGCCTTGCGAGCGGCGCGACG
CCGCGCCGCGCCGTCGTCGGCTGGGACAGCGGGCGGCTCGCGATGGTGCTCGCGGTGCTCGAGGCGCGCTGCGGGCTCCA
GATGGGCGCCGCCGAAGTCTATCTGAACATCGCGGGCGGCTATCGCCTCACCGATCCGGCGGCCGACCTTGCGGTCGCGG
CGGCGCTGATCTCGGCGTTCAGCGAGCGGCCGGTGCCCGCCGATGCGATCGTCTTCGGCGAACTGTCGCTGTCGGGCGAG
GTGCGCCCGGTCGCGCACGATGCGCTGCGCCTGCGCGAGGCGGCGAAGCTCGGCTTTTCAAGCGGCTGGGGGCCAAAGGG
GATGAAGGGTGTGAAGGGGATCGGCGTCACCGGCTTCGGCCGGCTCGGCGAACTCGTTGACCTGATGCTCGGGCGTGCCT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(81-219)

Subunit ChlI of Mg-chelatase (ChlI)

(342-419)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.629

100

0.488
  radA Streptococcus pneumoniae Rx1

47.072

98.013

0.461
  radA Streptococcus pneumoniae D39

47.072

98.013

0.461
  radA Streptococcus pneumoniae R6

47.072

98.013

0.461
  radA Streptococcus pneumoniae TIGR4

47.072

98.013

0.461
  radA Streptococcus mitis NCTC 12261

46.444

99.338

0.461
  radA Streptococcus mitis SK321

47.775

94.26

0.45