Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IM733_RS15875 Genome accession   NZ_CP063832
Coordinates   3590546..3591913 (-) Length   455 a.a.
NCBI ID   WP_011535790.1    Uniprot ID   Q1I4K8
Organism   Pseudomonas entomophila strain 23S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3585546..3596913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM733_RS15855 - 3586495..3587499 (-) 1005 WP_248917524.1 efflux RND transporter periplasmic adaptor subunit -
  IM733_RS15860 - 3587717..3588868 (-) 1152 WP_248917525.1 acyl-CoA dehydrogenase family protein -
  IM733_RS15865 - 3589118..3589330 (-) 213 WP_349292545.1 tautomerase family protein -
  IM733_RS15870 - 3589445..3590530 (+) 1086 WP_248917526.1 LLM class flavin-dependent oxidoreductase -
  IM733_RS15875 radA 3590546..3591913 (-) 1368 WP_011535790.1 DNA repair protein RadA Machinery gene
  IM733_RS15880 mscL 3592092..3592505 (+) 414 WP_248917527.1 large-conductance mechanosensitive channel protein MscL -
  IM733_RS15885 - 3592622..3593398 (-) 777 WP_248917528.1 ferredoxin--NADP reductase -
  IM733_RS15890 - 3593613..3594317 (+) 705 WP_248917529.1 autoinducer binding domain-containing protein -
  IM733_RS15895 - 3594414..3595538 (+) 1125 WP_248917530.1 methyltransferase -
  IM733_RS15900 - 3595688..3595828 (-) 141 WP_248917531.1 DUF2474 domain-containing protein -
  IM733_RS15905 cydB 3595841..3596848 (-) 1008 WP_248917532.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48711.15 Da        Isoelectric Point: 6.8984

>NTDB_id=496990 IM733_RS15875 WP_011535790.1 3590546..3591913(-) (radA) [Pseudomonas entomophila strain 23S]
MAKAKRLYGCTECGATFPKWAGQCGDCGAWNTLVETMIESGGAAAPSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVQMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETIIA
TARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=496990 IM733_RS15875 WP_011535790.1 3590546..3591913(-) (radA) [Pseudomonas entomophila strain 23S]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGCGCGACGTTCCCCAAGTGGGCCGGCCAGTGCGGCGACTG
CGGTGCCTGGAACACCCTGGTCGAAACCATGATCGAAAGCGGTGGCGCTGCCGCACCGAGCGGCCGTGCAGGCTGGACCG
GGCAGCAGGCACAGATCAAGACCCTGGCCGAGGTGAGCGTCGAGGAGATCCCGCGCTTCACCACCAGCAGCACCGAATTG
GATCGAGTGCTCGGTGGAGGCCTGGTGGATGGCTCCGTGGTGTTGATCGGTGGCGACCCTGGCATCGGCAAGTCGACCAT
CCTCCTGCAGACCTTGTGCAACATCGCCGTGCAGATGCCTGCGCTGTACGTCACCGGCGAGGAGTCGCAGCAGCAGGTGG
CCATGCGTTCGCGGCGCCTGGGCTTGCCCCAGGACCAGCTCAAGGTGATGACCGAGACCTGCATCGAGACCATCATCGCC
ACCGCGCGCGTGGAAAAGCCGCGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAGTCGGCCCC
CGGCGGCGTGGCCCAGGTGCGCGAGAGCACGGCGCTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCATGTCACCAAGGAAGGTTCGCTCGCCGGCCCACGGGTGCTGGAACACATGGTCGACACCGTGCTGTATTTCGAG
GGCGAGTCCGATGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTTGGCGCGGTCAACGAGCTGGGCGTGTTCGG
CATGACCGACCGCGGCCTGAAAGAGGTCTCCAACCCTTCGGCGATCTTCCTCAACCGCACCCAGGAAGAAGTGCCAGGCA
GCGTGGTCATGGCCACCTGGGAGGGGACCCGGCCAATGCTGGTGGAGGTGCAGGCATTGGTCGACGACAGCCACCTGGCC
AACCCGCGCCGGGTAACTCTGGGCCTGGACCAGAACCGCCTGGCCATGCTGCTGGCGGTGCTGCACCGGCATGGCGGTAT
CCCCACCCACGATCAGGATGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAGACCGCTTCAGACCTGGCGCTGC
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGACCGCTGGCCCACGGCCTGCTGGTGTTCGGCGAGATCGGCCTGTCGGGC
GAGGTGCGCCCGGTCCCTAGTGGCCAGGAGCGCTTGAAGGAAGCGGCCAAGCATGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAACGCCCCGAAGGAAGCACCGGCGGGTCTGCAGGTGATCGCCGTGACCCGCCTTGAACAGGCGCTGGATGCGTTGT
TCGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(354-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1I4K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.488
  radA Streptococcus pneumoniae Rx1

46.187

100

0.466
  radA Streptococcus pneumoniae D39

46.187

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.187

100

0.466
  radA Streptococcus pneumoniae R6

46.187

100

0.466
  radA Streptococcus mitis NCTC 12261

45.969

100

0.464
  radA Streptococcus mitis SK321

46.154

100

0.462