Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IRM63_RS00790 Genome accession   NZ_CP063830
Coordinates   161993..163360 (+) Length   455 a.a.
NCBI ID   WP_080514229.1    Uniprot ID   -
Organism   Leuconostoc citreum strain 37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 156993..168360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRM63_RS00755 (IRM63_00755) - 157459..158352 (+) 894 WP_004899597.1 sulfite exporter TauE/SafE family protein -
  IRM63_RS00770 (IRM63_00770) - 158635..160068 (-) 1434 WP_080763161.1 aspartate ammonia-lyase -
  IRM63_RS00775 (IRM63_00775) rpiA 160238..160921 (-) 684 WP_004899594.1 ribose-5-phosphate isomerase RpiA -
  IRM63_RS00780 (IRM63_00780) - 160918..161199 (-) 282 WP_004904518.1 GNAT family N-acetyltransferase -
  IRM63_RS00785 (IRM63_00785) - 161425..161964 (+) 540 WP_004908493.1 deoxyuridine 5'-triphosphate nucleotidohydrolase -
  IRM63_RS00790 (IRM63_00790) radA 161993..163360 (+) 1368 WP_080514229.1 DNA repair protein RadA Machinery gene
  IRM63_RS00795 (IRM63_00795) gltX 163630..165126 (+) 1497 WP_004899587.1 glutamate--tRNA ligase -
  IRM63_RS00800 (IRM63_00800) - 165262..166164 (+) 903 WP_194320888.1 NADP-dependent oxidoreductase -
  IRM63_RS00805 (IRM63_00805) adhP 166319..167374 (+) 1056 WP_004904509.1 alcohol dehydrogenase AdhP -
  IRM63_RS00810 (IRM63_00810) - 167535..168074 (+) 540 WP_004904508.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48976.09 Da        Isoelectric Point: 5.0508

>NTDB_id=496959 IRM63_RS00790 WP_080514229.1 161993..163360(+) (radA) [Leuconostoc citreum strain 37]
MAKVKTQFICSNCGYVSARYLGRCSNCGEWGTLVEEKVLPETTDRKSRVSLDGRTAKVEKINEVTSEETPRVATNLKELN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSGQLAHEGRVLYVTGEESATQVKLRADRLGVGNDEFYLYPETDMTAIKKQ
IDDLQPDFVVIDSVQTMQEPDVTSAIGSVSQIREVTADLLQIAKTNNISVFIVGHVTKDGAIAGPKILEHMVDTVLYFEG
DSNYKYRILRAVKNRFGATNELGIFEMRDGGLIEVANPSEIFLEERLAGATGSAIVVALEGSRPILVELQALVTPTVFGN
AQRTASGLDRNRVSLIMAVLEKRANLLLQNQDAYLKAAGGVKLDEPAIDLAIAVALASSYHDKESRPSDVFVGEIGLTGE
VRSVADIEGRLKEARKLGFKRAIVPKNNLNGIELPAGIQVIGVATLSEALALALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=496959 IRM63_RS00790 WP_080514229.1 161993..163360(+) (radA) [Leuconostoc citreum strain 37]
ATCGCTAAAGTAAAAACACAATTTATTTGTTCTAACTGCGGCTATGTTTCAGCACGTTATCTCGGGCGCTGTAGCAATTG
TGGCGAATGGGGTACGCTTGTCGAAGAAAAGGTCTTACCAGAAACAACAGACCGTAAGAGCAGAGTGAGCTTGGATGGTC
GGACTGCCAAAGTCGAAAAAATTAATGAAGTCACTTCAGAAGAAACGCCGCGAGTAGCGACAAACCTCAAAGAATTAAAT
CGTGTCTTAGGGGGTGGTGTGGTACCGGGCTCTATGGTGCTCATTGGTGGTGACCCTGGTATTGGTAAGTCGACCTTGCT
ATTGCAAGTATCTGGTCAATTAGCTCATGAGGGACGTGTCTTGTATGTTACAGGTGAAGAATCTGCCACTCAGGTGAAGT
TACGTGCTGACCGCTTAGGTGTCGGGAATGATGAATTTTATCTTTATCCTGAGACAGACATGACAGCCATTAAGAAGCAA
ATTGATGATTTACAACCTGATTTTGTTGTGATTGATTCCGTTCAAACAATGCAGGAGCCCGATGTAACTTCTGCTATAGG
ATCAGTTTCACAAATTAGAGAAGTAACTGCTGACTTATTACAAATTGCCAAGACAAATAATATATCTGTTTTCATTGTTG
GACATGTCACCAAGGATGGGGCAATTGCTGGACCAAAAATTTTAGAGCATATGGTTGATACGGTGCTTTATTTTGAAGGA
GATAGTAACTATAAATATCGTATTTTACGTGCTGTTAAAAACCGTTTTGGTGCCACCAATGAATTAGGGATCTTTGAAAT
GCGTGATGGTGGACTAATTGAAGTTGCTAATCCGTCAGAAATATTTTTAGAGGAGCGACTTGCTGGTGCAACTGGGTCAG
CTATTGTTGTGGCGCTTGAAGGCTCACGACCAATTTTAGTCGAGTTGCAAGCATTAGTGACGCCGACTGTTTTTGGTAAT
GCTCAACGAACAGCATCGGGATTGGACCGCAATCGCGTGTCGTTAATCATGGCAGTGCTCGAAAAACGCGCCAACTTGTT
ATTACAAAATCAAGATGCATACCTGAAAGCGGCCGGCGGGGTTAAATTAGATGAACCGGCGATTGATTTAGCTATTGCTG
TGGCCTTGGCGAGTTCATATCATGATAAAGAATCACGACCTAGTGATGTCTTTGTAGGTGAAATTGGATTGACTGGGGAA
GTGCGTAGTGTGGCTGATATTGAAGGACGATTGAAAGAAGCGCGCAAACTTGGTTTTAAAAGAGCAATTGTGCCAAAAAA
TAACCTCAATGGTATTGAATTACCAGCAGGAATTCAAGTCATTGGCGTTGCCACATTAAGTGAAGCCTTGGCGTTAGCGT
TAGATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)

AAA domain (AAA_25)

(70-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

66.444

98.901

0.657
  radA Streptococcus pneumoniae D39

66.444

98.901

0.657
  radA Streptococcus pneumoniae R6

66.444

98.901

0.657
  radA Streptococcus pneumoniae TIGR4

66.444

98.901

0.657
  radA Streptococcus mitis SK321

66.222

98.901

0.655
  radA Streptococcus mitis NCTC 12261

66.222

98.901

0.655
  radA Bacillus subtilis subsp. subtilis str. 168

62.061

100

0.622