Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IH404_RS24490 Genome accession   NZ_CP063780
Coordinates   5626902..5628269 (-) Length   455 a.a.
NCBI ID   WP_005791613.1    Uniprot ID   A0A7S7S4R6
Organism   Pseudomonas sp. OST1909     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5621902..5633269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IH404_RS24470 (IH404_24470) yjiA 5622864..5623823 (-) 960 WP_194439285.1 GTPase -
  IH404_RS24475 (IH404_24475) - 5624013..5624210 (-) 198 WP_003194308.1 YbdD/YjiX family protein -
  IH404_RS24480 (IH404_24480) - 5624226..5626292 (-) 2067 WP_005791609.1 carbon starvation CstA family protein -
  IH404_RS24485 (IH404_24485) - 5626466..5626834 (+) 369 WP_005791611.1 PilZ domain-containing protein -
  IH404_RS24490 (IH404_24490) radA 5626902..5628269 (-) 1368 WP_005791613.1 DNA repair protein RadA Machinery gene
  IH404_RS24495 (IH404_24495) - 5628305..5628844 (-) 540 WP_005791615.1 ankyrin repeat domain-containing protein -
  IH404_RS24500 (IH404_24500) katB 5628902..5630443 (-) 1542 WP_005791616.1 catalase KatB -
  IH404_RS24505 (IH404_24505) mscL 5630731..5631150 (+) 420 WP_005791618.1 large-conductance mechanosensitive channel protein MscL -
  IH404_RS24510 (IH404_24510) - 5631191..5631967 (-) 777 WP_005791620.1 ferredoxin--NADP reductase -
  IH404_RS24515 (IH404_24515) - 5632426..5633136 (+) 711 WP_005791622.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48763.28 Da        Isoelectric Point: 6.8987

>NTDB_id=496783 IH404_RS24490 WP_005791613.1 5626902..5628269(-) (radA) [Pseudomonas sp. OST1909]
MAKAKRMYGCTECGATFPKWAGQCSECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPAGLQVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=496783 IH404_RS24490 WP_005791613.1 5626902..5628269(-) (radA) [Pseudomonas sp. OST1909]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGCTCCGAATG
CGGTGCGTGGAACACCCTGACTGAAACCATGATCGAAAGCGGTGGTGCCGCAGCCCCTACCGGCCGCGCCGGCTGGACCG
GACAACAGGCACAGATCAAGACCCTGGCCGAGGTCAGCGTCGAAGAGATCCCGCGTTTCTCCACCGCGTCCGGCGAACTG
GACCGCGTACTTGGCGGTGGCCTGGTCGATGGTTCGGTGGTGCTGATCGGCGGTGACCCAGGCATCGGCAAGTCGACCAT
CCTCTTGCAAACCCTGTGCAGCATCGCCAGCCGTATGCCGGCGCTGTACGTCACCGGCGAAGAATCCCAACAGCAAGTGG
CCATGCGCGCCCGCCGTTTGGGCCTGCCCCAGGACCAGTTGCGGGTCATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCGCGGATCGAAAAGCCCAAGGTCATGGTAATTGACTCGATCCAGACGATTTTCACCGAGCAACTGCAATCGGCACC
GGGCGGCGTGTCCCAGGTGCGCGAGAGTGCGGCGCTGTTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCATGTGACCAAGGAAGGCGCGCTGGCCGGGCCACGGGTGTTGGAGCACATGGTGGATACCGTGCTGTATTTCGAA
GGTGAGTCCGATGGCCGCCTGCGTTTGCTGCGGGCGGTAAAAAACCGCTTTGGCGCCGTGAACGAGCTGGGTGTGTTCGC
CATGACTGACCGTGGACTGAAAGAAGTCTCCAACCCCTCGGCGATCTTTCTCACTCGGGCCCAGGAAGAAGTCCCGGGCA
GTGTGGTGATGGCGACGTGGGAGGGTACCCGGCCCATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCATTTGGCC
AACCCGCGGCGGGTCACGCTGGGCCTGGACCAGAACCGTCTGGCGATGTTGCTGGCGGTATTGCACCGTCACGGCGGCAT
TCCGACCCATGACCAGGATGTTTTCCTTAACGTAGTGGGCGGGGTCAAGGTGCTGGAGACCGCCTCCGACCTGGCGCTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAATCGGCCGCTGCCCCATGATCTGCTGGTGTTTGGTGAGGTCGGCCTGTCGGGC
GAAGTCCGCCCGGTGCCCAGTGGGCAGGAGCGGTTGAAGGAGGCGGCCAAGCATGGGTTCAAGCGGGCGATCGTGCCCAA
GGGCAATGCGCCGAAGGAAATGCCGGCAGGTTTGCAGGTGATTGGGGTGACGCGCCTGGAGCAGGCGTTGGATGCACTGT
TCGAGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S7S4R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.059

100

0.475
  radA Streptococcus mitis NCTC 12261

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47