Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IPZ59_RS06420 Genome accession   NZ_CP063779
Coordinates   1527287..1528669 (+) Length   460 a.a.
NCBI ID   WP_236139054.1    Uniprot ID   -
Organism   Mongoliitalea daihaiensis strain X100-76     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1522287..1533669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPZ59_RS06400 (IPZ59_06405) - 1522621..1522980 (-) 360 WP_236139050.1 hypothetical protein -
  IPZ59_RS06405 (IPZ59_06410) udk 1523081..1523698 (-) 618 WP_236139051.1 uridine kinase -
  IPZ59_RS06410 (IPZ59_06415) - 1523717..1524286 (-) 570 WP_236139052.1 non-canonical purine NTP diphosphatase -
  IPZ59_RS06415 (IPZ59_06420) polA 1524463..1527279 (+) 2817 WP_236139053.1 DNA polymerase I -
  IPZ59_RS06420 (IPZ59_06425) radA 1527287..1528669 (+) 1383 WP_236139054.1 DNA repair protein RadA Machinery gene
  IPZ59_RS06425 (IPZ59_06430) - 1528747..1529190 (+) 444 WP_236139055.1 response regulator -
  IPZ59_RS06430 (IPZ59_06435) - 1529351..1531555 (+) 2205 WP_236139056.1 DUF5916 domain-containing protein -
  IPZ59_RS06435 (IPZ59_06440) - 1531557..1532063 (-) 507 WP_236139057.1 hypothetical protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50479.37 Da        Isoelectric Point: 6.6073

>NTDB_id=496760 IPZ59_RS06420 WP_236139054.1 1527287..1528669(+) (radA) [Mongoliitalea daihaiensis strain X100-76]
MAKVKTSYFCQNCGANSAKWLGKCPSCGEWNTYVEELVQKEEQGLGTWKAGLSKERKAAKPRLLHEVNFEEQPRVVTGDA
ELNRVLGGGIVPGSLILIGGEPGIGKSTLLLQIALELSKLKVLYVSGEESEQQIKMRADRMAFQSANCYVLAETNTQQIF
TQVEVLKPDLLIIDSIQTLHSQLVESAAGSVSQVRECTAELMKFAKETGTPVFLIGHITKEGTIAGPKVLEHMVDTVLQF
EGDRHLTYRILRTSKNRFGSTHELGIYEMRADGLRQVANPSEILLTQREEILNGVSIGAMMEGNRPLIIEIQSLVSPATY
GTPQRSSTGFDSKRLNMLLAVLEKRGGMRLGQQDVFLNVAGGLKVDDPALDLAVCASLISSYEDTAIPNSLCFAGEVGLG
GEIRAVHKIESRISEAEKLGFKTIMVSKYGLKGIDLSKFWITIIPIVKLDDMYKNLFLVS

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=496760 IPZ59_RS06420 WP_236139054.1 1527287..1528669(+) (radA) [Mongoliitalea daihaiensis strain X100-76]
ATGGCAAAAGTAAAGACGAGCTATTTCTGTCAAAATTGTGGGGCCAACAGTGCAAAATGGTTAGGGAAATGTCCTTCTTG
TGGAGAGTGGAATACCTATGTGGAGGAGCTGGTCCAAAAAGAGGAACAAGGGTTGGGTACCTGGAAAGCAGGCTTGTCCA
AGGAGAGAAAAGCAGCGAAACCTCGGTTGTTGCATGAAGTAAATTTTGAGGAGCAACCAAGAGTTGTCACAGGAGATGCC
GAACTCAACAGGGTGCTGGGAGGAGGCATTGTTCCCGGTTCACTGATCTTGATAGGAGGAGAGCCTGGTATTGGTAAATC
AACCTTATTGCTACAAATAGCTTTAGAGCTATCTAAGTTAAAGGTTCTGTATGTGTCCGGTGAAGAAAGTGAGCAACAAA
TAAAAATGCGGGCTGATCGGATGGCTTTTCAATCTGCCAATTGCTATGTATTAGCAGAAACGAATACGCAACAAATCTTT
ACCCAAGTGGAGGTGTTGAAGCCTGACTTGTTGATTATTGACTCCATACAGACCTTGCATAGTCAATTGGTGGAATCTGC
AGCAGGATCGGTTTCTCAGGTGCGGGAATGTACTGCGGAGCTGATGAAATTTGCGAAGGAAACGGGAACCCCTGTATTTT
TGATTGGTCATATTACCAAAGAAGGCACGATTGCTGGACCAAAAGTCCTAGAGCATATGGTGGATACGGTATTACAATTT
GAAGGGGACCGGCATTTGACCTACCGGATATTGAGAACTTCCAAAAACAGATTTGGATCTACTCATGAGTTGGGGATATA
TGAAATGCGGGCAGATGGCTTACGACAAGTAGCGAATCCCTCGGAAATACTACTAACACAGCGGGAAGAAATCCTGAATG
GAGTTTCTATTGGAGCTATGATGGAGGGGAATAGGCCTTTGATTATCGAAATACAATCACTTGTCAGTCCAGCTACATAT
GGGACACCTCAACGAAGCAGTACCGGGTTCGACTCCAAGCGCTTAAACATGCTCTTGGCTGTATTGGAAAAAAGGGGAGG
TATGAGACTTGGGCAGCAGGATGTTTTTTTGAATGTGGCGGGGGGATTGAAGGTCGATGATCCGGCTTTGGACTTGGCAG
TTTGTGCATCCTTAATTTCTTCCTATGAAGATACGGCAATTCCTAATAGTCTGTGTTTTGCCGGAGAAGTTGGATTAGGC
GGTGAAATCAGAGCGGTTCATAAAATTGAAAGTAGGATTTCTGAGGCAGAAAAGTTGGGCTTCAAAACCATCATGGTTTC
AAAATATGGATTAAAAGGGATCGATTTATCGAAGTTTTGGATAACTATTATACCGATCGTCAAATTGGATGATATGTATA
AAAATCTATTCTTAGTATCGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

52.402

99.565

0.522
  radA Streptococcus pneumoniae Rx1

52.402

99.565

0.522
  radA Streptococcus pneumoniae D39

52.402

99.565

0.522
  radA Streptococcus pneumoniae TIGR4

52.402

99.565

0.522
  radA Streptococcus mitis NCTC 12261

52.402

99.565

0.522
  radA Streptococcus mitis SK321

51.965

99.565

0.517
  radA Bacillus subtilis subsp. subtilis str. 168

53.67

94.783

0.509