Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IQ281_RS08785 Genome accession   NZ_CP063773
Coordinates   1933453..1934835 (-) Length   460 a.a.
NCBI ID   WP_012773160.1    Uniprot ID   A0AAW3SUS5
Organism   Pectobacterium carotovorum subsp. carotovorum PCCS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1928453..1939835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ281_RS08755 pepP 1928614..1929933 (-) 1320 WP_194431752.1 Xaa-Pro aminopeptidase -
  IQ281_RS08760 - 1930024..1930611 (-) 588 WP_194431527.1 YecA family protein -
  IQ281_RS08765 zapA 1930804..1931133 (+) 330 WP_012773157.1 cell division protein ZapA -
  IQ281_RS08775 - 1931430..1932071 (+) 642 WP_194431528.1 5-formyltetrahydrofolate cyclo-ligase -
  IQ281_RS08780 nadR 1932068..1933321 (-) 1254 WP_012773159.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  IQ281_RS08785 radA 1933453..1934835 (-) 1383 WP_012773160.1 DNA repair protein RadA Machinery gene
  IQ281_RS08790 serB 1934853..1935830 (-) 978 WP_012773161.1 phosphoserine phosphatase -
  IQ281_RS08795 - 1935983..1936678 (+) 696 WP_194431529.1 YtjB family periplasmic protein -
  IQ281_RS08800 - 1936733..1937650 (-) 918 WP_181845071.1 hypothetical protein -
  IQ281_RS08805 prfC 1937951..1939540 (+) 1590 WP_180778879.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49608.13 Da        Isoelectric Point: 7.4218

>NTDB_id=496723 IQ281_RS08785 WP_012773160.1 1933453..1934835(-) (radA) [Pectobacterium carotovorum subsp. carotovorum PCCS1]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDQ
SMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKTPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=496723 IQ281_RS08785 WP_012773160.1 1933453..1934835(-) (radA) [Pectobacterium carotovorum subsp. carotovorum PCCS1]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGTGCTGATTACCCGCGCTGGCAAGGGCAGTGCAGCGC
CTGTCATGCCTGGAACACCATTACCGAAGTGCGCCTCGCATCGGCGTCAGTATCACGTTCCGACCGCCTCACTGGCTATG
CGGGTGAGAGTGCTGGCGTCAGCCGGGTACAAAAACTTTCGGAAATCAGCCTTGAAGCCCTGCCCCGTTTTTCTACCGGT
TTTCAGGAGTTTGACCGCGTTCTGGGCGGCGGCGTCGTTCCTGGCAGCGCGATTCTGATCGGCGGTAACCCCGGCGCGGG
TAAAAGTACCCTGCTGCTGCAAACGCTCTGCAAACTGTCAGAGAATATGAAAACCCTGTACGTCACCGGGGAAGAATCCT
TGCAGCAGGTGGCGATGCGGGCACACCGCCTCAATTTACCGACACAGAATCTCAATATGCTGTCGGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAACAGGAACAGCCGAAGTTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCCCCCGGCAGCGTAGCGCAGGTGCGCGAAACCGCAGCCTACCTGACGCGCTTTGCAAAAACGCGCGGCGTCG
CCATCGTCATGGTCGGCCACGTCACCAAAGACGGCTCGCTCGCCGGGCCTAAAGTGTTGGAACACTGCATCGACTGCTCC
GTGTTGCTGGATGGCGATGCCGACTCCCGCTTCCGCACCCTGCGCAGCCATAAAAACCGTTTCGGTGCCGTTAACGAGCT
GGGTGTATTCGCGATGACGGAGCAAGGACTACGCGAGGTCAGCAATCCGTCTGCGATTTTCCTTAGCCGCGGGGACGAAG
TGACGTCCGGCAGTTCCGTTATGGTGGTGTGGGAAGGCACGCGCCCGCTGCTGGTCGAGATTCAGGCACTGGTGGATCAA
TCGATGATGTCGAACCCGCGCCGCGTGGCGGTCGGGCTGGAGCAAAATCGGTTAGCCATACTGCTAGCGGTGCTGCATCG
CCACGGCGGCTTGCAGATGTCAGATCAGGATGTGTTCGTGAATGTCGTCGGCGGCGTCAAAGTCACCGAAACCAGCGCCG
ATCTGGCGCTGCTGTTGTCACTGGTCTCCAGCTTCCGCGACCGCCCGCTGCCACAGGATCTCGTCATCTTCGGTGAGGTC
GGTCTGGCGGGCGAAATCCGCCCGGTTCCCAGCGGACAAGAGCGGATTACCGAAGCCGCCAAGCACGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAACGCCTGCCAGTATGCAGGTGTTCGGCGTGAAAAAGCTGGCCGACGCGC
TGGCGATCTTAGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.696

100

0.487
  radA Streptococcus mitis NCTC 12261

43.421

99.13

0.43
  radA Streptococcus pneumoniae Rx1

43.421

99.13

0.43
  radA Streptococcus pneumoniae D39

43.421

99.13

0.43
  radA Streptococcus pneumoniae R6

43.421

99.13

0.43
  radA Streptococcus pneumoniae TIGR4

43.421

99.13

0.43
  radA Streptococcus mitis SK321

43.421

99.13

0.43