Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | SSU12_RS00815 | Genome accession | NC_017619 |
| Coordinates | 123677..124630 (+) | Length | 317 a.a. |
| NCBI ID | WP_011922562.1 | Uniprot ID | - |
| Organism | Streptococcus suis SS12 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 118677..129630
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SSU12_RS00775 (SSU12_0124) | - | 118947..119890 (-) | 944 | Protein_115 | S66 peptidase family protein | - |
| SSU12_RS00780 (SSU12_0126) | comYA | 119976..120926 (+) | 951 | WP_011921718.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SSU12_RS00785 (SSU12_0127) | comYB | 120838..121875 (+) | 1038 | WP_011921719.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SSU12_RS00790 (SSU12_0128) | comYC | 121877..122158 (+) | 282 | WP_011921720.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SSU12_RS00795 (SSU12_0129) | comGD | 122139..122546 (+) | 408 | WP_011921721.1 | competence type IV pilus minor pilin ComGD | - |
| SSU12_RS00800 (SSU12_0130) | comYE | 122518..122811 (+) | 294 | WP_011921722.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| SSU12_RS00805 (SSU12_0131) | comGF/cglF | 122798..123232 (+) | 435 | WP_011922561.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| SSU12_RS00810 (SSU12_0132) | comGG | 123210..123620 (+) | 411 | WP_011921724.1 | competence type IV pilus minor pilin ComGG | - |
| SSU12_RS00815 (SSU12_0133) | comYH | 123677..124630 (+) | 954 | WP_011922562.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SSU12_RS00820 (SSU12_0134) | - | 124680..125867 (+) | 1188 | WP_012775422.1 | acetate kinase | - |
| SSU12_RS00825 (SSU12_0136) | - | 126182..126733 (+) | 552 | WP_012774908.1 | folate family ECF transporter S component | - |
| SSU12_RS00830 (SSU12_0137) | - | 126789..128045 (+) | 1257 | WP_011921729.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
| SSU12_RS00835 (SSU12_0138) | pepA | 128092..129153 (-) | 1062 | WP_011921730.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35776.92 Da Isoelectric Point: 4.5177
>NTDB_id=49671 SSU12_RS00815 WP_011922562.1 123677..124630(+) (comYH) [Streptococcus suis SS12]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNATYVAGQHETDLVVKNNQTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPKEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKTAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNATYVAGQHETDLVVKNNQTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPKEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKTAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
Nucleotide
Download Length: 954 bp
>NTDB_id=49671 SSU12_RS00815 WP_011922562.1 123677..124630(+) (comYH) [Streptococcus suis SS12]
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACTAA
TATCTATGATGCCATGATTGAGCAAAATGCTACTTACGTAGCTGGTCAGCATGAGACGGATCTTGTTGTCAAAAACAATC
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTATCAATTCTTGCTCATCAAGGCCAATCAGACT
GAGCCCATGCAGTACAATCACCAGTTCACACCAGACTCTATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTGGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTGGATTATTTGGGGATCGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTCGCCAGTCCAAAGGAACATACCTACGCCCATCATTTGCTCA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GACTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGACGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACTAA
TATCTATGATGCCATGATTGAGCAAAATGCTACTTACGTAGCTGGTCAGCATGAGACGGATCTTGTTGTCAAAAACAATC
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTATCAATTCTTGCTCATCAAGGCCAATCAGACT
GAGCCCATGCAGTACAATCACCAGTTCACACCAGACTCTATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTGGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTGGATTATTTGGGGATCGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTCGCCAGTCCAAAGGAACATACCTACGCCCATCATTTGCTCA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GACTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGACGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
60.443 |
99.685 |
0.603 |
| comYH | Streptococcus mutans UA159 |
60.127 |
99.685 |
0.599 |