Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   IOD65_RS18490 Genome accession   NZ_CP063769
Coordinates   3875345..3876913 (+) Length   522 a.a.
NCBI ID   WP_005065716.1    Uniprot ID   A0AAE9M8U7
Organism   Acinetobacter sp. Ac-14     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3870345..3881913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD65_RS18470 (IOD65_18470) - 3870837..3872138 (+) 1302 WP_002121263.1 homoserine dehydrogenase -
  IOD65_RS18475 (IOD65_18475) thrC 3872193..3873332 (+) 1140 WP_002048893.1 threonine synthase -
  IOD65_RS18480 (IOD65_18480) pbpG 3873440..3874486 (-) 1047 WP_005065720.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  IOD65_RS18485 (IOD65_18485) - 3874699..3875334 (+) 636 WP_005065717.1 response regulator -
  IOD65_RS18490 (IOD65_18490) pilS 3875345..3876913 (+) 1569 WP_005065716.1 sensor histidine kinase Regulator
  IOD65_RS18495 (IOD65_18495) pilR 3876938..3878350 (+) 1413 WP_005065713.1 sigma-54-dependent transcriptional regulator Regulator
  IOD65_RS18500 (IOD65_18500) - 3878354..3879538 (-) 1185 WP_002121269.1 S41 family peptidase -
  IOD65_RS18505 (IOD65_18505) gpmI 3879554..3881101 (-) 1548 WP_005065710.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59053.58 Da        Isoelectric Point: 6.3671

>NTDB_id=496684 IOD65_RS18490 WP_005065716.1 3875345..3876913(+) (pilS) [Acinetobacter sp. Ac-14]
MQFPVNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPTLYSYTLLGYSLLSLLQLLCFKFIATQATRQ
LILFFVVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDAEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIQIELNDFLKTLLDEDLSDVK
HAIQLKSSDLSLKLLFDEKQLRQVLINLVRNALRHNAPHSPDVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=496684 IOD65_RS18490 WP_005065716.1 3875345..3876913(+) (pilS) [Acinetobacter sp. Ac-14]
ATGCAATTTCCCGTAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCCACTTTATATTCTT
ATACACTACTCGGCTATTCGCTCTTAAGCCTTCTTCAACTTTTATGCTTCAAGTTTATTGCCACTCAGGCAACAAGGCAG
CTCATTTTATTTTTTGTAGTTGATATTATCTGTCTGAGTTTACTTACATTTTCAGTAGGCGAACCCAATCTTCAACTCAG
CTTGCTCTATGTTATTGCCATATTTACTTCGGCCATTTTACTTAGCGCAAGAATGTCGTTGCTCATTACATTACTTGCAG
TCATTGCGGTTATTTACCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGCGCCTTA
TTGGCATTCTTGTTTTTTGTAGTACATGGAATCGGACAAATTGCGGTCCAGCGCTTTAAATTACTTGAAGCGCTAACTTT
CCATCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATCTTGGAACAAATTGAAGAGGGCTATTTAGTTC
TAGATGAAAACTACGACATTGTTTTAAGTAACCCAGCCGCCTGCTCTCTTTTAGGAATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCAAAATGGCATGCTGACTTATTTGAAATTCTTAAGTTTGATAACTTAAAAGAAGGTGATCGATTTAT
TTTTGAGTCTCGACTGTCGGCTTACTCTATTAATATTAAAGTGCAACATCTTTTGGTGCCGCAGCAAGCATTAACACTAC
TCATCTTACAAGATGCGCAGCAGATTAATCAGCAAGCTCAACAACTCAAACTTGCTGCTTTAGGACAACTCTCAGCAAGT
ATTGCACATGAGATCCGTAATCCTCTTGCAGCCATTGTTCAAGCAAATGAATTACTCAAAGATAGTGACGCGGAACAGCA
AAATACTTTACGCAATATGATTGGCAAGCAAACGAAACGCATTGATAGTATTGTTCAAGATACGTTAGGACTTGCCCGCA
GTGAAAGAACGTATCCCATCCAGATTGAATTAAATGACTTCTTAAAAACGTTATTAGATGAAGATTTATCTGATGTTAAA
CATGCGATCCAGCTTAAAAGTTCTGATTTATCCTTAAAGCTATTGTTTGATGAAAAGCAACTCAGACAAGTGCTCATTAA
CCTTGTTAGGAATGCTCTACGCCACAATGCACCCCACTCTCCCGATGTTCTGATCAATATCCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGGGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACCTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-250)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.061

100

0.941