Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   IOD65_RS18330 Genome accession   NZ_CP063769
Coordinates   3844417..3844743 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter sp. Ac-14     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3839417..3849743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD65_RS18310 (IOD65_18310) - 3839518..3840144 (-) 627 WP_005065779.1 FHA domain-containing protein -
  IOD65_RS18315 (IOD65_18315) gspD 3840185..3842461 (-) 2277 WP_005065777.1 type II secretion system secretin GspD -
  IOD65_RS18320 (IOD65_18320) - 3842503..3843339 (-) 837 WP_005065775.1 type II secretion system protein N -
  IOD65_RS18325 (IOD65_18325) gspN 3843339..3844082 (-) 744 WP_005065773.1 type II secretion system protein N -
  IOD65_RS18330 (IOD65_18330) hns 3844417..3844743 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  IOD65_RS18335 (IOD65_18335) - 3844938..3845378 (-) 441 WP_002121251.1 acyl-CoA thioesterase -
  IOD65_RS18340 (IOD65_18340) - 3845386..3846579 (-) 1194 WP_005065771.1 hypothetical protein -
  IOD65_RS18345 (IOD65_18345) - 3846589..3847431 (-) 843 WP_032063108.1 hypothetical protein -
  IOD65_RS18350 (IOD65_18350) - 3847440..3848207 (-) 768 WP_005065765.1 uroporphyrinogen-III synthase -
  IOD65_RS18355 (IOD65_18355) hemC 3848211..3849128 (-) 918 WP_031945258.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=496682 IOD65_RS18330 WP_000801427.1 3844417..3844743(-) (hns) [Acinetobacter sp. Ac-14]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=496682 IOD65_RS18330 WP_000801427.1 3844417..3844743(-) (hns) [Acinetobacter sp. Ac-14]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1