Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   IM712_RS18085 Genome accession   NZ_CP063768
Coordinates   3717459..3718412 (-) Length   317 a.a.
NCBI ID   WP_070081621.1    Uniprot ID   -
Organism   Bacillus velezensis strain KMU01     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3712459..3723412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM712_RS18055 - 3712611..3713597 (-) 987 WP_029325950.1 ABC transporter ATP-binding protein -
  IM712_RS18060 - 3713771..3714556 (-) 786 WP_077722052.1 DUF2268 domain-containing protein -
  IM712_RS18065 fabF 3714640..3715878 (-) 1239 WP_003155056.1 beta-ketoacyl-ACP synthase II -
  IM712_RS18070 - 3715901..3716839 (-) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  IM712_RS18075 - 3717007..3717225 (+) 219 WP_003155059.1 hypothetical protein -
  IM712_RS18080 comZ 3717255..3717446 (-) 192 WP_003155061.1 ComZ family protein Regulator
  IM712_RS18085 med 3717459..3718412 (-) 954 WP_070081621.1 BMP family ABC transporter substrate-binding protein Regulator
  IM712_RS18090 - 3718502..3719068 (-) 567 WP_077722051.1 hypothetical protein -
  IM712_RS18095 - 3719151..3719885 (-) 735 WP_077722050.1 hypothetical protein -
  IM712_RS18100 - 3720146..3720331 (+) 186 WP_032874447.1 YjzD family protein -
  IM712_RS18105 - 3720368..3720547 (-) 180 WP_003155070.1 YjzC family protein -
  IM712_RS18110 argF 3720623..3721594 (-) 972 WP_071391999.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35315.92 Da        Isoelectric Point: 4.5594

>NTDB_id=496634 IM712_RS18085 WP_070081621.1 3717459..3718412(-) (med) [Bacillus velezensis strain KMU01]
MITRLVMIFSVLLLLSGCAQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHDFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNQTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=496634 IM712_RS18085 WP_070081621.1 3717459..3718412(-) (med) [Bacillus velezensis strain KMU01]
TTGATCACCAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGATGCGCACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTTCCCGATACCATCAGTGACTTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCACCTTATGGGAGAAGCAA
TGGGCTTTTTCGGGGGAATGACGGCCGCCCATATGTCAAAAACCAATGAGGTAGGTGTCATCGCCTCCTTTCTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGGGCGAAATATGAAAAGCCTGATATCACCGTCAATACGGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TACGCTCAAGAGCGGAGATCACGACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCGCTGGTGGACA
AAGCGTTTCAAGACAAAATCTCAGACCTTGTAAAAACGTATAACCAAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

78.549

100

0.785