Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IM712_RS16560 Genome accession   NZ_CP063768
Coordinates   3435817..3436101 (-) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain KMU01     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3430817..3441101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM712_RS16540 ade 3430923..3432656 (-) 1734 WP_077722154.1 adenine deaminase -
  IM712_RS16545 ktrC 3432805..3433470 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  IM712_RS16550 - 3433511..3434338 (-) 828 WP_077722153.1 gamma-glutamylcyclotransferase -
  IM712_RS16555 - 3434340..3435644 (-) 1305 WP_077722152.1 ATP-binding protein -
  IM712_RS16560 abrB 3435817..3436101 (-) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  IM712_RS16565 mreBH 3436371..3437378 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  IM712_RS16570 - 3437450..3437583 (+) 134 Protein_3232 protein YkpC -
  IM712_RS16575 - 3437684..3438916 (+) 1233 WP_070081754.1 aminopeptidase -
  IM712_RS16580 - 3438946..3439854 (-) 909 WP_077722151.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=496624 IM712_RS16560 WP_024085249.1 3435817..3436101(-) (abrB) [Bacillus velezensis strain KMU01]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=496624 IM712_RS16560 WP_024085249.1 3435817..3436101(-) (abrB) [Bacillus velezensis strain KMU01]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543