Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IM712_RS15705 Genome accession   NZ_CP063768
Coordinates   3221375..3222274 (-) Length   299 a.a.
NCBI ID   WP_077722193.1    Uniprot ID   -
Organism   Bacillus velezensis strain KMU01     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3216375..3227274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM712_RS15690 xerC 3216759..3217676 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  IM712_RS15695 trmFO 3217746..3219053 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  IM712_RS15700 topA 3219118..3221193 (-) 2076 WP_025649465.1 type I DNA topoisomerase -
  IM712_RS15705 dprA 3221375..3222274 (-) 900 WP_077722193.1 DNA-processing protein DprA Machinery gene
  IM712_RS15710 sucD 3222339..3223241 (-) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  IM712_RS15715 sucC 3223270..3224427 (-) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  IM712_RS15720 - 3224602..3224882 (-) 281 Protein_3062 FlhB-like flagellar biosynthesis protein -
  IM712_RS15725 - 3224879..3226582 (-) 1704 WP_077722192.1 glycosyl transferase -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32862.05 Da        Isoelectric Point: 8.4593

>NTDB_id=496623 IM712_RS15705 WP_077722193.1 3221375..3222274(-) (dprA) [Bacillus velezensis strain KMU01]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTVPEAIFREIERKDPELDEVLSDYRRKGITVI
PISSTRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=496623 IM712_RS15705 WP_077722193.1 3221375..3222274(-) (dprA) [Bacillus velezensis strain KMU01]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGTGCCCGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCAAAGGCATTACTGTCATT
CCGATTTCATCAACCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGAAACAC
GCCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCATTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCAGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.569

100

0.706
  dprA Lactococcus lactis subsp. cremoris KW2

41.288

88.294

0.365