Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   IM712_RS11870 Genome accession   NZ_CP063768
Coordinates   2344356..2345123 (+) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain KMU01     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2339356..2350123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM712_RS11840 - 2339639..2341771 (+) 2133 WP_015387990.1 HD family phosphohydrolase -
  IM712_RS11845 ybeY 2341772..2342245 (+) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  IM712_RS11850 - 2342226..2342600 (+) 375 WP_038461537.1 diacylglycerol kinase family protein -
  IM712_RS11855 - 2342724..2343134 (+) 411 WP_003152976.1 cytidine deaminase -
  IM712_RS11860 era 2343115..2344020 (+) 906 WP_007408285.1 GTPase Era -
  IM712_RS11865 - 2344176..2344319 (+) 144 WP_007408286.1 YqzL family protein -
  IM712_RS11870 recO 2344356..2345123 (+) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  IM712_RS11875 glyQ 2345425..2346312 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  IM712_RS11880 glyS 2346305..2348344 (+) 2040 WP_077722605.1 glycine--tRNA ligase subunit beta -
  IM712_RS11885 ccpN 2348445..2349083 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  IM712_RS11890 - 2349109..2349921 (+) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=496609 IM712_RS11870 WP_003152982.1 2344356..2345123(+) (recO) [Bacillus velezensis strain KMU01]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=496609 IM712_RS11870 WP_003152982.1 2344356..2345123(+) (recO) [Bacillus velezensis strain KMU01]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894