Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   IM712_RS11035 Genome accession   NZ_CP063768
Coordinates   2192954..2193706 (+) Length   250 a.a.
NCBI ID   WP_071181911.1    Uniprot ID   -
Organism   Bacillus velezensis strain KMU01     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2187954..2198706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM712_RS11020 - 2188177..2188368 (-) 192 WP_003152639.1 hypothetical protein -
  IM712_RS11025 - 2188821..2191463 (+) 2643 WP_060674740.1 valine--tRNA ligase -
  IM712_RS11030 - 2191522..2192814 (+) 1293 WP_077722653.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  IM712_RS11035 comC 2192954..2193706 (+) 753 WP_071181911.1 prepilin peptidase Machinery gene
  IM712_RS11040 - 2193833..2194834 (+) 1002 WP_077722652.1 SPOR domain-containing protein -
  IM712_RS11045 - 2194975..2195544 (+) 570 WP_077722651.1 Maf family protein -
  IM712_RS11050 radC 2195576..2196271 (+) 696 WP_007408165.1 RadC family protein -
  IM712_RS11055 mreB 2196363..2197376 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  IM712_RS11060 mreC 2197407..2198270 (+) 864 WP_003152649.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27012.64 Da        Isoelectric Point: 9.2521

>NTDB_id=496602 IM712_RS11035 WP_071181911.1 2192954..2193706(+) (comC) [Bacillus velezensis strain KMU01]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCGLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFALLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=496602 IM712_RS11035 WP_071181911.1 2192954..2193706(+) (comC) [Bacillus velezensis strain KMU01]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGCTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTTGCGCTGTTATTTCTGTCTCTGCTGAT
GATTGTTACTGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCAGGAGCTGTTTGTGGATTTGCTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGAGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584