Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   IM712_RS07210 Genome accession   NZ_CP063768
Coordinates   1446042..1446731 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain KMU01     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1441042..1451731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM712_RS07190 - 1441547..1442623 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  IM712_RS07195 - 1442713..1443927 (-) 1215 WP_070082459.1 LCP family protein -
  IM712_RS07200 - 1443932..1444579 (-) 648 WP_060657503.1 YigZ family protein -
  IM712_RS07205 degS 1444802..1445965 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  IM712_RS07210 degU 1446042..1446731 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  IM712_RS07215 - 1446829..1447677 (+) 849 WP_003151387.1 DegV family protein -
  IM712_RS07220 comFA 1447785..1449170 (+) 1386 WP_077722929.1 DEAD/DEAH box helicase Machinery gene
  IM712_RS07225 - 1449228..1449512 (+) 285 WP_017418816.1 late competence development ComFB family protein -
  IM712_RS07230 comFC 1449518..1450207 (+) 690 WP_202980098.1 phosphoribosyltransferase family protein Machinery gene
  IM712_RS07235 - 1450281..1450700 (+) 420 WP_043867469.1 TIGR03826 family flagellar region protein -
  IM712_RS07240 flgM 1450770..1451036 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  IM712_RS07245 - 1451051..1451533 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=496590 IM712_RS07210 WP_003219701.1 1446042..1446731(+) (degU) [Bacillus velezensis strain KMU01]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=496590 IM712_RS07210 WP_003219701.1 1446042..1446731(+) (degU) [Bacillus velezensis strain KMU01]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1