Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IM712_RS04205 Genome accession   NZ_CP063768
Coordinates   856186..856476 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain KMU01     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 851186..861476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM712_RS04190 - 851409..852734 (-) 1326 WP_094247906.1 G5 and 3D domain-containing protein -
  IM712_RS04195 - 852869..853636 (-) 768 WP_032868379.1 TatD family hydrolase -
  IM712_RS04200 metG 853712..855703 (-) 1992 WP_077721688.1 methionine--tRNA ligase -
  IM712_RS04205 abrB 856186..856476 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  IM712_RS04210 rsmI 856526..857407 (-) 882 WP_070081259.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  IM712_RS04215 - 857382..857681 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  IM712_RS04220 - 857668..858411 (-) 744 WP_077721687.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  IM712_RS04225 yabA 858472..858831 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  IM712_RS04230 ricT 858846..859673 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  IM712_RS04235 holB 859676..860665 (-) 990 WP_077721686.1 DNA polymerase III subunit delta' -
  IM712_RS04240 - 860677..861117 (-) 441 WP_004264730.1 YaaR family protein -
  IM712_RS04245 darA 861130..861459 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=496578 IM712_RS04205 WP_169510469.1 856186..856476(+) (abrB) [Bacillus velezensis strain KMU01]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=496578 IM712_RS04205 WP_169510469.1 856186..856476(+) (abrB) [Bacillus velezensis strain KMU01]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979