Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   IM712_RS02645 Genome accession   NZ_CP063768
Coordinates   537025..537462 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain KMU01     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 532025..542462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM712_RS02630 - 534881..535243 (-) 363 WP_016936795.1 winged helix-turn-helix transcriptional regulator -
  IM712_RS02635 hxlA 535475..536110 (+) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  IM712_RS02640 hxlB 536107..536664 (+) 558 WP_077721772.1 6-phospho-3-hexuloisomerase -
  IM712_RS02645 nucA/comI 537025..537462 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  IM712_RS02650 nin/comJ 537484..537882 (+) 399 WP_077721770.1 competence protein ComJ Regulator
  IM712_RS02655 - 537901..538131 (-) 231 Protein_502 family 1 glycosylhydrolase -
  IM712_RS19550 - 538130..538402 (-) 273 WP_412030773.1 family 1 glycosylhydrolase -
  IM712_RS02665 - 538344..538619 (-) 276 WP_369719109.1 YckD family protein -
  IM712_RS02670 - 538737..539171 (-) 435 WP_021494203.1 RDD family protein -
  IM712_RS02675 - 539186..540322 (-) 1137 WP_077721769.1 zinc-dependent alcohol dehydrogenase -
  IM712_RS02680 - 540387..541589 (-) 1203 WP_077721768.1 GTP-binding protein -
  IM712_RS19250 - 541734..541862 (+) 129 Protein_508 hypothetical protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=496574 IM712_RS02645 WP_003156588.1 537025..537462(+) (nucA/comI) [Bacillus velezensis strain KMU01]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=496574 IM712_RS02645 WP_003156588.1 537025..537462(+) (nucA/comI) [Bacillus velezensis strain KMU01]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641