Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   IM712_RS02460 Genome accession   NZ_CP063768
Coordinates   478354..478473 (-) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus velezensis strain KMU01     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 473354..483473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM712_RS02435 - 473592..474350 (-) 759 WP_022552588.1 ABC transporter ATP-binding protein -
  IM712_RS02440 - 474344..475291 (-) 948 WP_077721797.1 iron chelate uptake ABC transporter family permease subunit -
  IM712_RS02445 ceuB 475281..476234 (-) 954 WP_003156332.1 ABC transporter permease Machinery gene
  IM712_RS02450 - 476649..478013 (+) 1365 WP_077721796.1 aspartate kinase -
  IM712_RS02455 - 478093..478203 (+) 111 WP_369719092.1 YjcZ family sporulation protein -
  IM712_RS02460 phrC 478354..478473 (-) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  IM712_RS02465 rapC 478457..479605 (-) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  IM712_RS02470 - 479758..481191 (-) 1434 WP_172802825.1 sensor histidine kinase -
  IM712_RS02475 - 481178..481861 (-) 684 WP_003156341.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=496572 IM712_RS02460 WP_003156334.1 478354..478473(-) (phrC) [Bacillus velezensis strain KMU01]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=496572 IM712_RS02460 WP_003156334.1 478354..478473(-) (phrC) [Bacillus velezensis strain KMU01]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718