Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   IM712_RS00305 Genome accession   NZ_CP063768
Coordinates   45433..46224 (-) Length   263 a.a.
NCBI ID   WP_003155502.1    Uniprot ID   A0A9Q3QM78
Organism   Bacillus velezensis strain KMU01     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 40433..51224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM712_RS00265 - 40701..41036 (-) 336 WP_077721961.1 SdpI family protein -
  IM712_RS00270 - 41122..41649 (-) 528 WP_070081523.1 SH3 domain-containing protein -
  IM712_RS00275 - 41781..42050 (-) 270 WP_003155492.1 YfhJ family protein -
  IM712_RS00280 - 42174..42326 (+) 153 WP_003155495.1 small, acid-soluble spore protein K -
  IM712_RS00285 - 42472..43383 (+) 912 WP_003155497.1 trypsin-like serine peptidase -
  IM712_RS00290 - 43346..43735 (+) 390 WP_077721960.1 DUF2606 family protein -
  IM712_RS00295 - 43775..44968 (-) 1194 WP_025650229.1 MFS transporter -
  IM712_RS00300 - 45115..45426 (-) 312 WP_025650230.1 YfhH family protein -
  IM712_RS00305 recX 45433..46224 (-) 792 WP_003155502.1 recombination regulator RecX Regulator
  IM712_RS00310 - 46315..47214 (+) 900 WP_077721959.1 TIGR01777 family oxidoreductase -
  IM712_RS00315 - 47272..47382 (+) 111 WP_003155504.1 YfhE family protein -
  IM712_RS00320 - 47453..47644 (+) 192 WP_003155508.1 YfhD family protein -
  IM712_RS00325 - 47683..48267 (-) 585 WP_077721958.1 nitroreductase -
  IM712_RS00330 - 48344..49228 (-) 885 WP_077721957.1 PhzF family phenazine biosynthesis isomerase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30978.18 Da        Isoelectric Point: 6.2735

>NTDB_id=496569 IM712_RS00305 WP_003155502.1 45433..46224(-) (recX) [Bacillus velezensis strain KMU01]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=496569 IM712_RS00305 WP_003155502.1 45433..46224(-) (recX) [Bacillus velezensis strain KMU01]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTACTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAGATCC
AGCACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATATCGGATGCGGTCTGAAAAAGAAGTC
CGGGATCACCTGAAGAAAAAAGAAACACCGGACATGGTTATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGTCCTGACGTCCTATTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGCGCGTTTACATTTGATGAGCAGATACAAGAA
GCGTTGAAACATATCGGCAAAATCCTCAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.087

100

0.791