Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   IPZ63_RS09465 Genome accession   NZ_CP063766
Coordinates   1963999..1965681 (-) Length   560 a.a.
NCBI ID   WP_002375273.1    Uniprot ID   A0A4Y3JJK4
Organism   Enterococcus lactis strain IDCC 2105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1958999..1970681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPZ63_RS09435 (IPZ63_09405) ftsL 1960274..1960675 (-) 402 WP_002297992.1 cell division protein FtsL -
  IPZ63_RS09440 (IPZ63_09410) rsmH 1960680..1961639 (-) 960 WP_002375271.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  IPZ63_RS09445 (IPZ63_09415) mraZ 1961660..1962091 (-) 432 WP_002291870.1 division/cell wall cluster transcriptional repressor MraZ -
  IPZ63_RS09450 (IPZ63_09420) - 1962261..1962629 (-) 369 WP_002291871.1 DUF3397 domain-containing protein -
  IPZ63_RS09455 (IPZ63_09425) - 1962800..1963756 (+) 957 WP_025478577.1 magnesium transporter CorA family protein -
  IPZ63_RS09460 (IPZ63_09430) - 1963829..1963945 (+) 117 WP_002291876.1 DUF4044 domain-containing protein -
  IPZ63_RS09465 (IPZ63_09435) recN 1963999..1965681 (-) 1683 WP_002375273.1 DNA repair protein RecN Machinery gene
  IPZ63_RS09470 (IPZ63_09440) - 1965699..1966148 (-) 450 WP_002286653.1 arginine repressor -
  IPZ63_RS09475 (IPZ63_09445) - 1966255..1967073 (-) 819 WP_002310269.1 TlyA family RNA methyltransferase -
  IPZ63_RS09480 (IPZ63_09450) - 1967082..1967972 (-) 891 WP_002375275.1 polyprenyl synthetase family protein -
  IPZ63_RS09485 (IPZ63_09455) - 1967974..1968198 (-) 225 WP_002286657.1 exodeoxyribonuclease VII small subunit -
  IPZ63_RS09490 (IPZ63_09460) xseA 1968203..1969540 (-) 1338 WP_002315413.1 exodeoxyribonuclease VII large subunit -
  IPZ63_RS09495 (IPZ63_09465) - 1969541..1970395 (-) 855 WP_002375276.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63293.66 Da        Isoelectric Point: 4.5791

>NTDB_id=496542 IPZ63_RS09465 WP_002375273.1 1963999..1965681(-) (recN) [Enterococcus lactis strain IDCC 2105]
MLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRGSSDYIRQGAEKCILEGLFELPKQEGFSELM
VELGIETDEDNLIVRRDMSLTGKNVCRVNGHIITLANLRKIGSYLVDIQGQNEHQELLQPESHLALLDRFGDAAFQQKKK
SYQQEYTSYRELEKRVRKVQQNEKSYVQRIDMLHFQQEEIAAADLQVGEEEKLKEEREKLSNYQKIADGLAAGYGALTNN
EQNSVDGVGLAVAELQGIAHLDVEYEAIYENIQSAYYLLQDAIGDMSRQIDLLELDESRLEEVTQRLELIRQLKRKYGES
IESVLAYYDEITEELASSDFSEGQLDKMKEELEQKELLLQQQAADLHEARKKIAKELEKSILHELKSLYMENTEFEVRFL
KEENRQLNHDGFDQIEFYITTNPGEPLKPLVKVASGGELSRMLLALKTIFSSEQGVTSIIFDEVDTGVSGRVAQAIADKI
SQISKYSQVLCITHLPQVAAVADYQYYIVKAVIDGRTQTSVSELKTKEREEEIARMLAGSEITKLTLEHAKELLQLAKRT

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=496542 IPZ63_RS09465 WP_002375273.1 1963999..1965681(-) (recN) [Enterococcus lactis strain IDCC 2105]
ATGCTACAAGAAATCAGTATTACTAACTTTGCGATTATTCCGGAATTGCGGCTTTCTTTTCACGAAGGAATGACCGCGCT
GACCGGAGAGACTGGTGCGGGTAAATCCATCATTATCGATGCTTTAGGTTTGTTAGCAGGAGGAAGAGGTTCAAGCGATT
ATATACGTCAAGGCGCAGAAAAATGCATTCTTGAAGGATTGTTTGAACTTCCGAAACAAGAAGGATTCTCTGAATTGATG
GTTGAATTAGGTATCGAAACGGATGAAGACAATCTGATCGTTCGAAGGGATATGTCGTTGACTGGAAAAAATGTTTGCCG
AGTGAATGGTCATATCATCACGCTAGCTAATCTAAGGAAAATCGGCAGTTATTTAGTGGATATCCAAGGGCAAAACGAAC
ATCAGGAACTGCTCCAGCCTGAATCACATCTTGCTTTATTGGATCGTTTTGGAGATGCAGCTTTCCAACAGAAGAAAAAG
AGTTATCAGCAAGAATATACCTCTTATCGTGAGCTGGAAAAAAGGGTACGAAAAGTGCAGCAAAATGAAAAATCCTATGT
TCAGAGAATAGATATGCTTCATTTCCAGCAAGAAGAAATAGCTGCTGCTGATTTGCAAGTCGGAGAAGAAGAGAAATTAA
AAGAAGAAAGAGAAAAACTTAGCAATTATCAAAAAATTGCTGATGGATTAGCTGCAGGCTACGGAGCACTGACGAATAAT
GAACAAAACAGTGTAGATGGTGTTGGCTTGGCCGTTGCAGAATTGCAAGGGATCGCACATCTAGATGTGGAGTATGAAGC
AATTTATGAAAATATCCAAAGTGCTTACTATTTGCTACAAGATGCAATCGGCGACATGAGTCGTCAAATCGATTTGTTGG
AGTTAGATGAGAGTCGTTTAGAAGAAGTGACGCAACGTTTAGAATTAATCCGACAGTTGAAACGCAAATATGGCGAATCC
ATTGAGTCGGTATTGGCTTACTATGACGAAATCACCGAAGAGCTAGCTTCTTCTGATTTTTCAGAAGGTCAATTGGACAA
AATGAAAGAGGAACTAGAGCAAAAAGAGCTTCTACTTCAGCAACAAGCCGCAGATCTTCATGAAGCGCGTAAAAAAATCG
CAAAAGAATTGGAAAAATCCATTCTGCATGAATTAAAAAGTCTGTATATGGAAAACACTGAGTTTGAAGTACGTTTCTTA
AAAGAAGAAAACAGACAATTGAATCATGATGGGTTTGACCAAATCGAATTCTACATTACGACCAATCCAGGAGAACCGCT
GAAGCCTTTAGTGAAAGTCGCTTCTGGTGGCGAATTATCTCGGATGTTACTGGCTTTGAAAACTATTTTTTCTTCTGAGC
AAGGTGTGACAAGTATTATCTTTGATGAAGTGGATACAGGTGTAAGTGGAAGAGTTGCACAAGCCATCGCGGATAAAATT
TCTCAAATATCGAAATACTCTCAAGTTTTGTGCATCACTCATCTGCCGCAAGTCGCCGCAGTCGCCGACTATCAATATTA
TATCGTGAAAGCAGTGATTGATGGTCGTACGCAAACATCTGTTTCAGAATTGAAAACAAAAGAAAGAGAAGAAGAAATTG
CACGTATGCTAGCTGGGAGTGAGATTACAAAGCTGACACTCGAACATGCAAAAGAACTATTGCAACTCGCAAAAAGGACC
TGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y3JJK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.5