Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KIL93_RS09610 Genome accession   NZ_CP074971
Coordinates   1972297..1972926 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 13081     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1967297..1977926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIL93_RS09590 (KIL93_09455) ycbZ 1967699..1969459 (-) 1761 WP_000156528.1 AAA family ATPase -
  KIL93_RS09595 (KIL93_09460) matP 1969645..1970097 (+) 453 WP_000877167.1 macrodomain Ter protein MatP -
  KIL93_RS09600 (KIL93_09465) ompA 1970172..1971212 (-) 1041 WP_000750416.1 porin OmpA -
  KIL93_RS09605 (KIL93_09470) sulA 1971569..1972078 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KIL93_RS09610 (KIL93_09475) sxy/tfoX 1972297..1972926 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KIL93_RS09615 (KIL93_09480) yccS 1972889..1975051 (-) 2163 WP_419772650.1 YccS family putative transporter -
  KIL93_RS09620 (KIL93_09485) yccF 1975061..1975507 (-) 447 WP_001261235.1 YccF domain-containing protein -
  KIL93_RS09625 (KIL93_09490) helD 1975630..1977684 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=496490 KIL93_RS09610 WP_000839153.1 1972297..1972926(+) (sxy/tfoX) [Escherichia coli strain 13081]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=496490 KIL93_RS09610 WP_000839153.1 1972297..1972926(+) (sxy/tfoX) [Escherichia coli strain 13081]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1