Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   BACVE_RS16430 Genome accession   NZ_CP063687
Coordinates   3221749..3222516 (+) Length   255 a.a.
NCBI ID   WP_063636710.1    Uniprot ID   -
Organism   Bacillus velezensis strain NST6     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3216749..3227516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACVE_RS16400 (BACVE_003307) - 3217032..3219164 (+) 2133 WP_063636711.1 HD family phosphohydrolase -
  BACVE_RS16405 (BACVE_003308) ybeY 3219165..3219638 (+) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  BACVE_RS16410 (BACVE_003309) - 3219619..3219993 (+) 375 WP_003152974.1 diacylglycerol kinase family protein -
  BACVE_RS16415 (BACVE_003310) - 3220117..3220527 (+) 411 WP_017418172.1 cytidine deaminase -
  BACVE_RS16420 (BACVE_003311) era 3220508..3221413 (+) 906 WP_007408285.1 GTPase Era -
  BACVE_RS16425 (BACVE_003312) - 3221569..3221712 (+) 144 WP_007408286.1 YqzL family protein -
  BACVE_RS16430 (BACVE_003313) recO 3221749..3222516 (+) 768 WP_063636710.1 DNA repair protein RecO Machinery gene
  BACVE_RS16435 (BACVE_003314) glyQ 3222818..3223705 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  BACVE_RS16440 (BACVE_003315) glyS 3223698..3225737 (+) 2040 WP_063636709.1 glycine--tRNA ligase subunit beta -
  BACVE_RS16445 (BACVE_003316) ccpN 3225838..3226476 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  BACVE_RS16450 (BACVE_003317) - 3226502..3227314 (+) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29419.08 Da        Isoelectric Point: 8.7972

>NTDB_id=496305 BACVE_RS16430 WP_063636710.1 3221749..3222516(+) (recO) [Bacillus velezensis strain NST6]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSREG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGNVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=496305 BACVE_RS16430 WP_063636710.1 3221749..3222516(+) (recO) [Bacillus velezensis strain NST6]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCTGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCCGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAACGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGGCTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894