Detailed information NTG0496279

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: BACVE_RS10220
• Genome accession: NZ_CP063687
• Coordinates: 2028015..2029160 (-)
• Length: 381 a.a.
• NCBI ID: WP_017418708.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain NST6
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2023015..2034160

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BACVE_RS10195 (BACVE_002058)	-	2023299..2023730 (+)	432	WP_017418704.1	hypothetical protein	-
BACVE_RS10200 (BACVE_002059)	-	2023755..2025827 (-)	2073	WP_106067806.1	transglycosylase domain-containing protein	-
BACVE_RS10205 (BACVE_002060)	speE	2026027..2026857 (+)	831	WP_003151052.1	spermidine synthase	-
BACVE_RS10210 (BACVE_002061)	speB	2026917..2027789 (+)	873	WP_003151054.1	agmatinase	-
BACVE_RS10215 (BACVE_002062)	-	2027912..2028031 (-)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
BACVE_RS10220 (BACVE_002063)	rapF	2028015..2029160 (-)	1146	WP_017418708.1	tetratricopeptide repeat protein	Regulator
BACVE_RS10225 (BACVE_002064)	-	2029452..2029880 (+)	429	WP_014419128.1	DUF1934 family protein	-
BACVE_RS10230 (BACVE_002065)	argS	2029877..2031547 (+)	1671	WP_025649385.1	arginine--tRNA ligase	-
BACVE_RS10235 (BACVE_002066)	narK	2031682..2032872 (+)	1191	WP_017418712.1	nitrate transporter NarK	-
BACVE_RS10240 (BACVE_002067)	fnr	2032970..2033686 (+)	717	WP_017418713.1	fumarate/nitrate reduction transcriptional regulator Fnr	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45782.29 Da
• Isoelectric Point: 5.0722

>NTDB_id=496279 BACVE_RS10220 WP_017418708.1 2028015..2029160(-) (rapF) [Bacillus velezensis strain NST6]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEEDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=496279 BACVE_RS10220 WP_017418708.1 2028015..2029160(-) (rapF) [Bacillus velezensis strain NST6]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGAAGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAACTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.341	100	0.703
rapC	Bacillus subtilis subsp. subtilis str. 168	53.421	99.738	0.533