Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BACVE_RS08340 Genome accession   NZ_CP063687
Coordinates   1659944..1661056 (-) Length   370 a.a.
NCBI ID   WP_053285270.1    Uniprot ID   A0A411A1C1
Organism   Bacillus velezensis strain NST6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1654944..1666056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACVE_RS08325 (BACVE_001681) gyrA 1655033..1657492 (-) 2460 WP_025650119.1 DNA gyrase subunit A -
  BACVE_RS08330 (BACVE_001682) gyrB 1657708..1659624 (-) 1917 WP_014720600.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BACVE_RS08335 (BACVE_001683) - 1659681..1659926 (-) 246 WP_004392908.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  BACVE_RS08340 (BACVE_001684) recF 1659944..1661056 (-) 1113 WP_053285270.1 DNA replication/repair protein RecF Machinery gene
  BACVE_RS08345 (BACVE_001685) rlbA 1661072..1661287 (-) 216 WP_004392910.1 ribosome maturation protein RlbA -
  BACVE_RS08350 (BACVE_001686) dnaN 1661422..1662558 (-) 1137 WP_007409909.1 DNA polymerase III subunit beta -
  BACVE_RS08355 (BACVE_001687) dnaA 1662742..1664082 (-) 1341 WP_004392913.1 chromosomal replication initiator protein DnaA -
  BACVE_RS08360 rpmH 1664704..1664838 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  BACVE_RS08365 (BACVE_001688) rnpA 1664992..1665342 (+) 351 WP_004392944.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42429.38 Da        Isoelectric Point: 7.3309

>NTDB_id=496275 BACVE_RS08340 WP_053285270.1 1659944..1661056(-) (recF) [Bacillus velezensis strain NST6]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKNLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=496275 BACVE_RS08340 WP_053285270.1 1659944..1661056(-) (recF) [Bacillus velezensis strain NST6]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAAATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411A1C1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.054

100

0.941