Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BACVE_RS08110 Genome accession   NZ_CP063687
Coordinates   1618255..1618545 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain NST6     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1613255..1623545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACVE_RS08095 (BACVE_001636) - 1613477..1614802 (-) 1326 WP_104843579.1 G5 and 3D domain-containing protein -
  BACVE_RS08100 (BACVE_001637) - 1614937..1615704 (-) 768 WP_017419495.1 TatD family hydrolase -
  BACVE_RS08105 (BACVE_001638) metG 1615781..1617772 (-) 1992 WP_017419496.1 methionine--tRNA ligase -
  BACVE_RS08110 (BACVE_001639) abrB 1618255..1618545 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  BACVE_RS08115 (BACVE_001640) rsmI 1618595..1619476 (-) 882 WP_017419497.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BACVE_RS08120 (BACVE_001641) - 1619451..1619750 (-) 300 WP_063637080.1 GIY-YIG nuclease family protein -
  BACVE_RS08125 (BACVE_001642) - 1619737..1620480 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BACVE_RS08130 (BACVE_001643) yabA 1620541..1620900 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  BACVE_RS08135 (BACVE_001644) ricT 1620915..1621742 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  BACVE_RS08140 (BACVE_001645) holB 1621745..1622734 (-) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  BACVE_RS08145 (BACVE_001646) - 1622746..1623186 (-) 441 WP_004264730.1 DUF327 family protein -
  BACVE_RS08150 (BACVE_001647) darA 1623199..1623528 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=496273 BACVE_RS08110 WP_169510469.1 1618255..1618545(+) (abrB) [Bacillus velezensis strain NST6]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=496273 BACVE_RS08110 WP_169510469.1 1618255..1618545(+) (abrB) [Bacillus velezensis strain NST6]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979