Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   BACVE_RS00955 Genome accession   NZ_CP063687
Coordinates   233387..233983 (-) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain NST6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 228387..238983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACVE_RS00930 (BACVE_000183) mobB 228763..229284 (-) 522 WP_063636610.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  BACVE_RS00935 (BACVE_000184) glp 229245..230537 (-) 1293 WP_063636609.1 gephyrin-like molybdotransferase Glp -
  BACVE_RS00940 (BACVE_000185) - 230555..231574 (-) 1020 WP_065180237.1 molybdopterin-synthase adenylyltransferase MoeB -
  BACVE_RS00945 (BACVE_000186) - 231626..232228 (-) 603 WP_063636607.1 molybdenum cofactor guanylyltransferase -
  BACVE_RS00950 (BACVE_000187) - 232374..233366 (+) 993 WP_014417619.1 hypothetical protein -
  BACVE_RS00955 (BACVE_000188) rok 233387..233983 (-) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  BACVE_RS00960 (BACVE_000189) - 234435..234893 (-) 459 WP_025649508.1 TlpA disulfide reductase family protein -
  BACVE_RS00965 (BACVE_000190) - 235181..235987 (+) 807 WP_025649509.1 mechanosensitive ion channel family protein -
  BACVE_RS00970 (BACVE_000191) - 236021..236266 (-) 246 WP_003154596.1 YkuS family protein -
  BACVE_RS00975 (BACVE_000192) - 236327..237451 (-) 1125 WP_063636606.1 N-acetyldiaminopimelate deacetylase -
  BACVE_RS00980 (BACVE_000193) dapD 237522..238232 (-) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  BACVE_RS00985 (BACVE_000194) - 238314..238769 (-) 456 WP_014417614.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=496246 BACVE_RS00955 WP_003154591.1 233387..233983(-) (rok) [Bacillus velezensis strain NST6]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=496246 BACVE_RS00955 WP_003154591.1 233387..233983(-) (rok) [Bacillus velezensis strain NST6]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCGGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACGTTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843