Detailed information NTG0496233

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: IM698_RS14550
• Genome accession: NZ_CP063682
• Coordinates: 3260252..3261256 (-)
• Length: 334 a.a.
• NCBI ID: WP_210442147.1
• Uniprot ID: -
• Organism: Vibrio splendidus strain ED144
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3255252..3266256

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IM698_RS14520 (IM698_14505)	zapB	3255407..3255649 (+)	243	WP_009848877.1	cell division protein ZapB	-
IM698_RS14525 (IM698_14510)	rraA	3255759..3256277 (-)	519	WP_260809835.1	ribonuclease E activity regulator RraA	-
IM698_RS14530 (IM698_14515)	-	3256351..3257268 (-)	918	WP_248373157.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
IM698_RS14535 (IM698_14520)	hslU	3257424..3258764 (-)	1341	WP_009848880.1	HslU--HslV peptidase ATPase subunit	-
IM698_RS14540 (IM698_14525)	hslV	3258823..3259371 (-)	549	WP_004729692.1	ATP-dependent protease subunit HslV	-
IM698_RS14545 (IM698_14530)	-	3259596..3260129 (-)	534	WP_260809840.1	SPOR domain-containing protein	-
IM698_RS14550 (IM698_14535)	cytR	3260252..3261256 (-)	1005	WP_210442147.1	DNA-binding transcriptional regulator CytR	Regulator
IM698_RS14555 (IM698_14540)	priA	3261496..3263697 (-)	2202	WP_260809843.1	primosomal protein N'	-
IM698_RS14560 (IM698_14545)	rpmE	3264029..3264247 (+)	219	WP_004737142.1	50S ribosomal protein L31	-
IM698_RS14565 (IM698_14550)	-	3264570..3265859 (+)	1290	WP_248388963.1	malic enzyme-like NAD(P)-binding protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36515.05 Da
• Isoelectric Point: 6.4911

>NTDB_id=496233 IM698_RS14550 WP_210442147.1 3260252..3261256(-) (cytR) [Vibrio splendidus strain ED144]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKSEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPVSATLCKFRQQGYQQALRRAGVAMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGSTAPPRM

Nucleotide

• Length: 1005 bp

>NTDB_id=496233 IM698_RS14550 WP_210442147.1 3260252..3261256(-) (cytR) [Vibrio splendidus strain ED144]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACAGCCACAGTATCACGTGCATTGATGAACCCTGAGAA
AGTCTCAGTTTCGACTCGTAAACGAGTGGAAACAGCAGTACTTGAAGCTGGATACTCACCCAATACATTAGCTAGAAACT
TACGTCGCAACGAATCAAAAACCATCATCACTATCGTTCCTGATATCTGTGACCCATATTTTGCCGAAATCATTCGAGGT
ATCGAAGATGCCGCAGTAGAAAATGACTACCTTGTCTTACTGGGTGATAGCGGCCAACAAAAGAAGCGTGAGTCTTCGTT
TGTTAACTTAGTTTTCACCAAACAAGCTGACGGCATGCTGTTGCTTGGCACTGACCATCCATTTGATGTCAGTAAGTCTG
AACAAAAGAATTTACCACCAATGGTGATGGCGTGTGAGTTTGCCCCTGAGCTTGAACTTCCTACCGTACACATCGATAAC
CTGACCTCTGCATTTGAAGCGGTTAACTACCTAGCTCAGTTAGGCCATAAACGTATCGCTCAAATATCAGGTCCTGTATC
AGCAACTCTGTGTAAGTTCCGCCAACAAGGTTATCAACAAGCTCTGCGTCGTGCAGGTGTGGCAATGAACCCAGCCTACA
GCACAGTCGGCGACTTCACTTTTGAAGCCGGCGCTCAAGCAGTTCGTCAATTACTAGCACTGCCTGAACAACCAACCGCT
ATCTTCTGTCATAACGATGCGATGGCCATTGGTGCGATTCAAGAAGCGAAGAAGTTAGGTTTACGTGTTCCTCAAGACCT
ATCGATTGTTGGCTTCGATGACATTCAGTTCGCTCAATACTGCGATCCACCGCTAACCACCATTTCTCAACCTCGTTACG
AGATTGGACGCCAAGCGATGTTGATGATGCTTGATCTACTGAAAGGCAACGATGTGCAAGCAGGTTCGCGTCTGCTTGAA
GCCAAATTAGTGGTTCGAGGCAGTACTGCGCCACCTCGAATGTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-329)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	89.458	99.401	0.889
cytR	Vibrio parahaemolyticus RIMD 2210633	87.087	99.701	0.868