Detailed information NTG0496221

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: IM698_RS06945
• Genome accession: NZ_CP063682
• Coordinates: 1538893..1542282 (-)
• Length: 1129 a.a.
• NCBI ID: WP_260811008.1
• Uniprot ID: -
• Organism: Vibrio splendidus strain ED144
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 1533893..1547282

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IM698_RS06930 (IM698_06915)	-	1534318..1535343 (-)	1026	WP_009847563.1	ABC transporter permease	-
IM698_RS06935 (IM698_06920)	-	1535346..1536332 (-)	987	WP_010436046.1	ABC transporter permease	-
IM698_RS06940 (IM698_06925)	-	1536502..1538184 (-)	1683	WP_016768984.1	ABC transporter substrate-binding protein	-
IM698_RS06945 (IM698_06930)	chiS	1538893..1542282 (-)	3390	WP_260811008.1	response regulator	Regulator
IM698_RS06950 (IM698_06935)	rsmC	1542499..1543521 (-)	1023	WP_260811009.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
IM698_RS06955 (IM698_06940)	-	1543632..1544717 (-)	1086	WP_004734536.1	AI-2E family transporter	-
IM698_RS06960	-	1544794..1544919 (+)	126	WP_004734537.1	hypothetical protein	-
IM698_RS06965 (IM698_06945)	hemL	1545062..1546357 (-)	1296	WP_010436060.1	glutamate-1-semialdehyde 2,1-aminomutase	-
IM698_RS06970 (IM698_06950)	erpA	1546654..1546995 (+)	342	WP_260811010.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127352.02 Da
• Isoelectric Point: 5.3158

>NTDB_id=496221 IM698_RS06945 WP_260811008.1 1538893..1542282(-) (chiS) [Vibrio splendidus strain ED144]
MFRFYRKQKFKRLQNTLMLAFLVLSITPVTLIAIFFLQSHSQDLQEQSTSHLVSVRDTKQQQIVDYLQAQESQVMGFVRS
ELANASGGRFYGLINAFQRLGLDIDEARSNAQQRYIQGSGDQIKTSILPESSSFIGSERYRLLHKRYHNAYLELLKRSDF
DDILLVDINGNVAYSVFKNDDYGTNLLTGKYKDSNLGVTFQRLAKDVKDKRKSNEDYTPVIVSDFKYEDGKQTAWLGAPI
VQQGYLHSYAMFRLPINGITKLIADLNKRSNIQTLLVGDDHLPRSLAHSQESINLSLDVVDKALAGETAVGTFDNTQDQA
IIAAYTPIDLKYATWALVVELPEKEAFARIHQLEKIFVIVMLTAIILVFVASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TMINTERKDEIGRLAVSFERMQRSIREKMQLIKSQNDELEDNLKTIQKQNEELQLANKLKDEFLATTSHELRTPLHGMVG
IAEALISGANGPIPANQKYQLDIIINSGQRLATLVDDLLDYHKMRYGSLDIKKSAVDLSAATSLVLELSHHLLGNKPIRI
INQVPSDLGLVSSDPQRLEQVMYNLVGNAIKYTSEGKIVISASVIDDNIRVQVVDTGQGIPAEYLEHIFEPLIQAGQDSS
NYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTLPLATQEELDSYNESGSYSHFQAPDLIDNSQQENSVINEDP
NGPLLVIADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCEALRKQYDHAQLPII
MLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHLSASKAEQRRLENDQLQLELKHRAMVEANLLETQGRLLEQL
ESAPEAIICIRDDQRIRFANEAAAKLFRRGQEQLKRSMADEIIAPKYLKVEQAHYCGDIDIYIDDTRQRIPSDILKLPEG
SGLDTMYIFNVGGGVNSNRINNLETAVEALSSYAFEGDKDKLQQLKELGGEFTRLADKATGEGKNKQELMREVLVDVMTN
AIIYWESVTGETKFAFAEKSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVLSSIEFILEHCKEQTPERTHIEMLR
DKLQKLLTS

Nucleotide

• Length: 3390 bp

>NTDB_id=496221 IM698_RS06945 WP_260811008.1 1538893..1542282(-) (chiS) [Vibrio splendidus strain ED144]
ATGTTTAGATTCTATCGTAAGCAGAAGTTTAAGCGCCTTCAAAATACCCTAATGTTGGCATTTCTTGTCCTCAGTATTAC
CCCAGTGACACTTATCGCGATATTTTTCCTTCAATCGCACAGTCAGGATCTTCAGGAACAAAGCACCTCACACCTTGTTT
CGGTCCGTGATACTAAGCAACAGCAAATTGTCGATTACCTGCAAGCTCAAGAATCCCAAGTCATGGGCTTTGTTCGCTCA
GAATTGGCCAATGCCAGTGGCGGACGCTTTTATGGTTTGATCAACGCCTTCCAGCGTCTCGGTTTAGATATTGACGAGGC
ACGCAGCAATGCTCAGCAACGCTACATCCAAGGCTCCGGCGATCAAATTAAAACATCGATTCTTCCAGAATCTAGCAGCT
TTATAGGCAGTGAACGTTATCGTCTGCTGCACAAGCGCTACCATAACGCTTACCTAGAGCTGCTGAAACGCTCCGATTTT
GACGATATCTTATTGGTTGATATTAACGGCAATGTGGCTTATTCGGTCTTTAAAAATGACGATTACGGCACCAATTTGCT
GACTGGAAAATACAAAGATTCAAATCTCGGTGTTACCTTTCAACGCTTAGCAAAAGACGTCAAAGACAAACGAAAATCCA
ACGAAGATTACACGCCCGTTATTGTTTCCGACTTTAAATACGAAGACGGAAAACAAACCGCATGGTTAGGTGCGCCTATC
GTACAACAGGGCTATCTACACAGTTATGCGATGTTTAGACTACCGATTAACGGCATTACTAAGCTGATCGCCGATTTAAA
TAAGCGCTCAAATATTCAAACCCTTTTGGTTGGTGACGATCACTTGCCTCGCAGCCTTGCGCACTCTCAAGAGTCGATTA
ATTTGAGTTTGGATGTTGTCGATAAGGCACTTGCCGGTGAAACAGCCGTTGGGACGTTTGATAACACTCAAGATCAAGCG
ATCATCGCGGCCTACACTCCTATTGATCTTAAATACGCAACATGGGCTTTGGTCGTGGAACTTCCAGAAAAAGAAGCCTT
TGCTCGTATTCATCAGCTAGAAAAGATCTTCGTGATCGTTATGCTAACAGCGATCATTCTTGTGTTTGTCGCATCGCATT
ATCTGTCTAACTTTATCACTTCCCCACTACTTAAACTGACGTGGGCTGCTGAGAAAGTCTCGGCGGGAGATCTTGATGAA
ACCATGATCAATACAGAACGCAAAGATGAAATAGGTCGCTTGGCGGTTAGTTTCGAAAGAATGCAGCGATCGATTCGTGA
AAAGATGCAGCTGATCAAGAGCCAAAACGATGAACTAGAGGACAACCTTAAGACCATTCAAAAGCAAAACGAAGAGTTGC
AGCTTGCCAATAAACTGAAAGATGAATTCTTGGCGACGACTTCGCATGAGCTCAGAACACCACTGCATGGCATGGTTGGT
ATCGCAGAGGCACTAATATCTGGTGCCAACGGCCCTATTCCTGCCAACCAGAAGTACCAGTTGGATATCATCATCAATAG
TGGTCAGAGATTGGCAACCTTGGTTGATGACCTGCTCGATTACCACAAAATGCGCTATGGCAGCTTGGACATTAAGAAAT
CAGCCGTTGATTTGTCTGCTGCCACCAGCCTAGTGCTTGAGTTATCTCATCATCTATTAGGTAACAAGCCAATCCGCATT
ATCAACCAAGTTCCAAGTGATTTAGGGCTAGTCTCGTCTGATCCTCAACGACTGGAGCAAGTGATGTATAACTTGGTCGG
TAATGCCATTAAGTACACATCCGAAGGTAAAATTGTTATCTCGGCAAGCGTTATCGACGACAACATTCGCGTACAAGTTG
TCGATACGGGCCAAGGCATCCCAGCAGAATACCTGGAACATATCTTTGAACCACTGATTCAAGCAGGGCAAGACTCAAGT
AACTATCGCCAAGGTGCAGGGCTTGGGTTGTCCATTAGCCGTCAGCTCATTGAACTAATGGGCGGCTCGTTGTACGTGAG
TAGTCAACCAATGCTTGGGACCACATTCAGCTTCACATTACCTCTAGCTACCCAAGAAGAATTGGATAGTTACAATGAAT
CAGGGAGCTACTCACATTTCCAAGCGCCAGATTTAATTGATAACTCTCAGCAAGAAAACAGTGTTATCAATGAAGACCCT
AATGGTCCGTTGTTAGTGATTGCTGACGATGAGCCAGTCAACCTGCGAGTATTAGACAGCTTCTTGAAATTAGAAGGTTA
TCGAGTACGTACTGCATGTGATGGCCCTGAAACCATTGAACTGATTGAAAAAGAGAAGCCAGAGCTACTTCTGCTCGACA
TCATGATGCCAGGGATGAGCGGCTATCAGGTTTGTGAAGCACTGAGAAAGCAATACGATCATGCTCAATTGCCAATCATC
ATGCTAACAGCTCTCAACCAAGCAGAAGACCGTGTTCGAGGTTTCGAAGCGGGCGCTAATGACTATTTGTCTAAACCGTT
CAACAAACAAGAATTAGCGGCTCGAATAACAGCGCATCTATCAGCAAGCAAAGCTGAACAGAGACGCCTTGAAAACGACC
AACTGCAACTCGAGCTCAAACATAGAGCGATGGTTGAGGCTAACCTGTTGGAAACTCAAGGGCGCTTATTAGAGCAACTA
GAATCGGCACCTGAAGCCATTATATGTATTCGTGATGACCAACGCATTCGCTTTGCCAACGAAGCGGCAGCCAAGCTATT
TAGGCGCGGGCAAGAGCAACTTAAGCGCTCAATGGCTGATGAAATTATTGCACCTAAATACCTCAAGGTGGAACAAGCTC
ACTACTGTGGTGACATCGATATCTATATTGATGACACCCGTCAGCGCATACCAAGTGATATTCTTAAACTACCTGAAGGC
TCAGGGCTCGATACCATGTATATCTTCAATGTGGGTGGTGGTGTTAATTCGAACCGTATCAATAACCTTGAAACGGCGGT
TGAGGCGCTTTCAAGTTATGCTTTTGAAGGCGACAAAGACAAACTGCAACAATTGAAAGAGCTCGGTGGTGAGTTTACTC
GCCTTGCTGATAAGGCAACTGGTGAAGGTAAAAACAAACAAGAGCTGATGCGTGAAGTACTAGTCGATGTAATGACTAAT
GCCATCATCTACTGGGAATCGGTGACTGGGGAAACCAAGTTTGCTTTCGCCGAGAAGAGTGGCTTGTGGCGCGTCTATTT
AGACCGCAGCACCCTGCAAACTCGAACGCTAGACAAATACCTACGCGTCGAAACCCTACCGAAAACGCCTCGCTGGCGAA
CGGTACTAAGCTCAATCGAATTCATACTTGAGCACTGTAAAGAACAAACACCAGAAAGAACTCATATTGAGATGCTAAGG
GATAAACTACAGAAGCTACTGACTAGTTAA

Domains

Predicted by InterproScan.

• PAS domain (PAS_8) (880-914)

• HAMP domain (HAMP) (375-427)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• Response regulator receiver domain (Response_reg) (726-836)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.439	100	0.764