Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   IM698_RS06670 Genome accession   NZ_CP063682
Coordinates   1470371..1470889 (+) Length   172 a.a.
NCBI ID   WP_248389195.1    Uniprot ID   -
Organism   Vibrio splendidus strain ED144     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1465371..1475889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM698_RS06660 (IM698_06645) gshA 1468117..1469685 (+) 1569 WP_017629421.1 glutamate--cysteine ligase -
  IM698_RS06665 (IM698_06650) - 1469696..1470346 (+) 651 WP_017629422.1 hypothetical protein -
  IM698_RS06670 (IM698_06655) luxS 1470371..1470889 (+) 519 WP_248389195.1 S-ribosylhomocysteine lyase Regulator
  IM698_RS06675 (IM698_06660) - 1471011..1472282 (-) 1272 WP_248372811.1 HlyC/CorC family transporter -
  IM698_RS06680 (IM698_06665) - 1472409..1473203 (-) 795 WP_248372806.1 inner membrane protein YpjD -
  IM698_RS06685 (IM698_06670) ffh 1473404..1474798 (+) 1395 WP_010435884.1 signal recognition particle protein -
  IM698_RS06690 (IM698_06675) rpsP 1475011..1475259 (+) 249 WP_004735508.1 30S ribosomal protein S16 -
  IM698_RS06695 (IM698_06680) rimM 1475284..1475838 (+) 555 WP_248372804.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18992.72 Da        Isoelectric Point: 4.4901

>NTDB_id=496216 IM698_RS06670 WP_248389195.1 1470371..1470889(+) (luxS) [Vibrio splendidus strain ED144]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPTEQQVADGWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKEIANAIIVAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=496216 IM698_RS06670 WP_248389195.1 1470371..1470889(+) (luxS) [Vibrio splendidus strain ED144]
ATGCCTTTATTAGATAGTTTCACTGTTGATCACACACGCATGAACGCACCTGCCGTTCGTGTTGCTAAAACAATGCAAAC
CCCAAAAGGGGACACCATCACTGTGTTTGACCTGCGTTTTACTGCGCCAAACAAAGACATCCTATCTGAGAAAGGTATCC
ATACTCTAGAGCATCTATACGCTGGTTTCATGCGTAATCAATTGAACGGTTCAGATGTAGAGATCATCGATATCTCACCT
ATGGGTTGCCGTACTGGTTTCTACATGAGCCTGATTGGTACGCCTACAGAGCAACAAGTAGCTGACGGTTGGTTGGCGGC
TATGCAAGACGTACTGAAAGTTGAGAACCAGAATAAGATCCCTGAGCTGAACGAATACCAATGTGGTACCGCGGCAATGC
ACTCTTTGGATGAAGCGAAAGAGATCGCGAATGCAATCATCGTTGCAGGCATCTCTGTAAACAAGAATGATGAACTGGCA
CTACCAGAGTCGATGCTGCAAGAGCTTAAAATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884