Detailed information NTG0496213

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IM698_RS06545
• Genome accession: NZ_CP063682
• Coordinates: 1447969..1448949 (+)
• Length: 326 a.a.
• NCBI ID: WP_260810986.1
• Uniprot ID: -
• Organism: Vibrio splendidus strain ED144
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1442969..1453949

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IM698_RS06515 (IM698_06500)	ispD	1443221..1443922 (+)	702	WP_017087209.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IM698_RS06520 (IM698_06505)	ispF	1443925..1444404 (+)	480	WP_248374896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IM698_RS06525 (IM698_06510)	truD	1444427..1445470 (+)	1044	WP_248372828.1	tRNA pseudouridine(13) synthase TruD	-
IM698_RS06530 (IM698_06515)	surE	1445550..1446293 (+)	744	WP_260810984.1	5'/3'-nucleotidase SurE	-
IM698_RS06535 (IM698_06520)	-	1446294..1446920 (+)	627	WP_065584104.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
IM698_RS06540 (IM698_06525)	nlpD	1446956..1447870 (+)	915	WP_260810985.1	murein hydrolase activator NlpD	-
IM698_RS06545 (IM698_06530)	rpoS	1447969..1448949 (+)	981	WP_260810986.1	RNA polymerase sigma factor RpoS	Regulator
IM698_RS06550 (IM698_06535)	mutS	1449089..1451650 (-)	2562	WP_260810987.1	DNA mismatch repair protein MutS	-
IM698_RS06555 (IM698_06540)	pncC	1451774..1452268 (+)	495	WP_260810988.1	nicotinamide-nucleotide amidase	-
IM698_RS06560 (IM698_06545)	recA	1452408..1453448 (+)	1041	WP_009847633.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37276.57 Da
• Isoelectric Point: 5.4366

>NTDB_id=496213 IM698_RS06545 WP_260810986.1 1447969..1448949(+) (rpoS) [Vibrio splendidus strain ED144]
MSISNAVTKEEFDLNQATMEPEALGKAKRTVKKKAETKEETEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=496213 IM698_RS06545 WP_260810986.1 1447969..1448949(+) (rpoS) [Vibrio splendidus strain ED144]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGCAACCATGGAACCGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCAAAAAGAAAGCCGAAACGAAAGAAGAGACTGAAGTTACATCTAAAAGTTTAGATGCTACTCAACTCT
ATCTAGGCGAAATCGGTTTCTCACCACTATTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGTGCTCTACGCGGTGAT
GAAGCAGCACGCAAACGCATGATTGAAAGTAACCTGCGTTTGGTGGTAAAAATTTCTCGTCGTTATAGCAACCGTGGCCT
TGCACTTCTCGATCTTATTGAAGAAGGCAACCTAGGTTTGATTCGCGCGGTAGAGAAGTTTGACCCAGAGCGTGGCTTCC
GCTTCTCAACCTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCGTTAATGAATCAGACTCGCACTATCCGTTTG
CCAATTCATGTTGTGAAAGAGCTGAATATCTACCTACGTACTGCACGAGAGCTATCACAAAAACTTGACCACGAACCAAC
GGCGGAAGAGATTGCTTCTAAGCTAGATAAACCAGTTGGTGATGTGAGTAAGATGCTTCGTCTAAACGAAAGAGTGAGCT
CCGTTGATACGCCGATTGGTGGTGATGGTGAGAAAGCGCTACTGGATATTATTCCGGACATCAACAACTCAGATCCTGAA
GTTTCAACTCAAGATAGCGATATCAAGAATTCACTGATTTTCTGGCTTGATGAGCTGAATCCGAAGCAGAAAGAGGTGCT
TGCGCGTCGCTTTGGACTACTTGGCTATGAACCGTCAACATTAGAAGAAGTAGGCCGTGAAATCAGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGTCGTCTACGTGAGATTCTAATCAAGCAAGGCTTGAATATGGAAAATCTG
TTCAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.437	100	0.834