Detailed information NTG0496209

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: IM698_RS05175
• Genome accession: NZ_CP063682
• Coordinates: 1149095..1150519 (-)
• Length: 474 a.a.
• NCBI ID: WP_248374732.1
• Uniprot ID: -
• Organism: Vibrio splendidus strain ED144
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1144095..1155519

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IM698_RS05150 (IM698_05140)	-	1144682..1145335 (+)	654	WP_248374727.1	thiopurine S-methyltransferase	-
IM698_RS05155 (IM698_05145)	purT	1145466..1146641 (-)	1176	WP_260810822.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
IM698_RS05160 (IM698_05150)	cdd	1146809..1147696 (-)	888	WP_248396619.1	cytidine deaminase	-
IM698_RS05165 (IM698_05155)	-	1148018..1148695 (-)	678	WP_260810823.1	LrgB family protein	-
IM698_RS05170 (IM698_05160)	-	1148698..1149069 (-)	372	WP_248374731.1	CidA/LrgA family protein	-
IM698_RS05175 (IM698_05165)	sbcB	1149095..1150519 (-)	1425	WP_248374732.1	exodeoxyribonuclease I	Machinery gene
IM698_RS05180 (IM698_05170)	-	1151520..1151954 (+)	435	WP_048611824.1	DUF4402 domain-containing protein	-
IM698_RS05185 (IM698_05175)	-	1152008..1152445 (+)	438	WP_260810824.1	DUF4402 domain-containing protein	-
IM698_RS05190 (IM698_05180)	-	1152442..1153152 (+)	711	WP_017090896.1	molecular chaperone	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54699.98 Da
• Isoelectric Point: 4.9171

>NTDB_id=496209 IM698_RS05175 WP_248374732.1 1149095..1150519(-) (sbcB) [Vibrio splendidus strain ED144]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAASQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDADELRERLYTKRSELGQDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFSDE
RIKPLLFRYRARHFPWTLDETEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=496209 IM698_RS05175 WP_248374732.1 1149095..1150519(-) (sbcB) [Vibrio splendidus strain ED144]
ATGAGTTCAGATAATCAGCCAACTTACTTCTTTTTCGATTACGAAACTTGGGGCGTTAGCCCAGCAAAAGACCGTCCGAG
TCAATTTGCGGGTGTTCGTACCGATCAAGATTTCAATGTTATTGGAGAGCCTCTGGTTATCTATTGTCAGCCCCCTGCTG
ATTACCTCCCGGCACCTGAAGCAGCGTTGATCACCCGCATTACGCCACAGAAAGCGGCTTCACAAGGACTTCCTGAACCA
GAGTTCATCGCTAAGATCCATGCTGAATTAGCGAAACCAAACACCACAAGCCTTGGCTACAACAGTATTCGATTTGATGA
TGAAGTGACGCGTTACACCTGTTATCGAAACTTCATCGACCCATATGCGTGGAGCTGGCAGAACGGCAATTCACGTTGGG
ATCTATTAGATGTAATGCGCGCTGTTCACGCACTTCGCCCTGAAGGCATTGTTTGGCCAGAGAACGAAGAAGGTTATCCA
AGCTTCAAACTGGAGCACCTATCTGTGGCAAATGGCATTGAACACGAAAACGCGCACGATGCGATGGCCGACGTGATTGC
GACTATCGAGTTAGCGAAGAAGCTAAAAGCTGCACAACCTAAGATGTTCGATTACCTTTACAACATGCGTCATAAGCGTA
AGCTGAATGACCTGGTTGATATCGTAAACATGACACCATTAATGCACGTTTCAGGCATGTTTGGTCGAGACTGCAACTAC
ACGAGTTGGATTGTGCCTATGGCTTGGCACCCAACCAACCAAAATGCGGTTATCGTGGTTGATTTAGCGAAAGATCCAAG
CCCGCTATTAGAACTGGATGCTGATGAACTCAGAGAAAGGCTCTACACTAAACGCAGTGAACTGGGTCAAGACGAGTTAC
CCGTACCCATCAAATTGGTTCAACTGAACAAGTGCCCTATTCTTGCTCCAGCCAAAACGCTGACGGCTGAAAATGCCGAA
ACCATCGGTATCGATCGTCAACAATGTTTGAAGAACTTGGCACTACTGCGCGAACATCCAGAGATTCGCGAAAAACTGAT
CGGCCTGTACTCACAAGAACGAGAGTATGAAAAGAGTGATGATGTTGATACACACCTTTACGACGGTTTCTTTTCACCTG
CTGACAAAACAGCGATGAACATCATTCGTGAAACTGACCCAAATAACTTGGCCGCTTTGGATATCACTTTCAGTGATGAA
CGCATTAAGCCGTTGTTGTTCCGTTATCGTGCTCGTCATTTCCCATGGACGCTCGACGAAACTGAACAACTGAAATGGGC
AAACCATTGTCGTGAGTTTTATGAGAGCCGTTTAGAAGAGTATATGTTGAACCTTGAAAACCTTGCGCACGAACATGAAA
GCGACGAGAAGAAAATGGCTATCTTGAAGGCGGTTTATCAATACGTAGAAAAGTTAGCCAGCTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	76.956	99.789	0.768