Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   IM698_RS05100 Genome accession   NZ_CP063682
Coordinates   1133660..1134841 (-) Length   393 a.a.
NCBI ID   WP_260810815.1    Uniprot ID   -
Organism   Vibrio splendidus strain ED144     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1128660..1139841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM698_RS05085 (IM698_05075) - 1129195..1130094 (+) 900 WP_260810813.1 Vmh family MBL fold metallo-hydrolase -
  IM698_RS05090 (IM698_05080) - 1130406..1131221 (+) 816 WP_248396600.1 TauD/TfdA dioxygenase family protein -
  IM698_RS05095 (IM698_05085) - 1131464..1133512 (+) 2049 WP_260810814.1 response regulator -
  IM698_RS05100 (IM698_05090) cqsA 1133660..1134841 (-) 1182 WP_260810815.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  IM698_RS05105 (IM698_05095) - 1135152..1136540 (-) 1389 WP_260810816.1 PLP-dependent aminotransferase family protein -
  IM698_RS05110 (IM698_05100) - 1136644..1137558 (+) 915 WP_260810817.1 EamA family transporter -
  IM698_RS05115 (IM698_05105) - 1137825..1138697 (+) 873 WP_260810818.1 aspartoacylase -
  IM698_RS05120 (IM698_05110) - 1138795..1139802 (-) 1008 WP_260810819.1 CobW family GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43786.77 Da        Isoelectric Point: 5.9505

>NTDB_id=496208 IM698_RS05100 WP_260810815.1 1133660..1134841(-) (cqsA) [Vibrio splendidus strain ED144]
MSDKTKNKPLPSFIEERLSFYIQDLITQNQSQKHLVLGKRPSRDAVVMQSNDYLSLSHNKAIQQAHQAAICEHDDNVVMS
AIFLQDADSKPVFETELANYVGMESCLLSQSGWAANIGLLQTICPPNTPVYIDFFAHMSLWEGIRAAGATAHPFMHNNMS
HLRKQLERHGSGVIVVDSVYSTIGTIAPLHDIYEMAQEFDCAVIVDESHSLGTHGEKGAGLVQALGLTDQVDFITVSLAK
TFAYRAGAILGPKQLSDTLPFVAYPAIFSSTVLPQEVIRLEKTLEEIKGADDKRETLFKRAQSLITGLKQIGFNIRSESQ
IVSLECGNERNTERVRDFLEERDVFGAVFCRPATGKNKNIIRFSVNADMTPRDIDHVLTVCHEAYHHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=496208 IM698_RS05100 WP_260810815.1 1133660..1134841(-) (cqsA) [Vibrio splendidus strain ED144]
ATGAGTGATAAAACCAAAAACAAACCATTACCTTCCTTTATTGAAGAACGCTTGAGCTTCTATATTCAAGACCTAATTAC
CCAGAACCAAAGCCAAAAACACTTGGTATTGGGTAAACGTCCATCGCGCGACGCCGTTGTCATGCAAAGCAATGATTATT
TGTCTTTGTCGCACAACAAAGCAATCCAACAAGCTCACCAAGCTGCGATCTGTGAGCACGATGACAACGTCGTGATGTCT
GCGATTTTCTTGCAAGATGCAGACTCTAAACCTGTGTTTGAAACCGAACTCGCGAACTATGTTGGAATGGAAAGTTGCCT
ACTTTCTCAGTCTGGTTGGGCAGCCAATATTGGGTTGCTTCAAACAATCTGTCCGCCAAATACGCCTGTGTATATCGACT
TCTTTGCACACATGTCGCTATGGGAAGGTATTCGCGCGGCGGGTGCGACGGCTCACCCATTTATGCATAACAATATGAGT
CATTTACGTAAGCAACTGGAACGTCATGGTTCCGGTGTGATTGTTGTCGACTCGGTTTACAGCACCATCGGTACCATTGC
CCCGCTCCACGACATCTACGAAATGGCACAAGAGTTTGACTGCGCTGTTATCGTCGATGAATCGCACTCATTAGGGACGC
ACGGTGAAAAAGGTGCAGGCTTAGTACAAGCTCTCGGGCTCACTGACCAAGTCGACTTTATCACGGTCAGCTTAGCCAAA
ACCTTCGCTTATCGTGCAGGCGCGATCCTTGGGCCCAAACAGCTATCCGATACTTTGCCGTTTGTCGCTTATCCCGCCAT
TTTTAGCTCAACTGTGTTGCCGCAAGAGGTGATTCGTTTAGAGAAAACATTGGAGGAGATTAAAGGTGCAGATGACAAAC
GAGAAACCCTGTTTAAGCGAGCACAATCGCTCATTACGGGTTTAAAGCAGATCGGCTTTAACATCCGTAGTGAATCTCAA
ATCGTCTCGCTAGAGTGCGGCAATGAAAGAAATACAGAGCGAGTACGCGATTTCCTTGAAGAGCGAGATGTGTTCGGCGC
AGTGTTCTGCCGTCCAGCGACGGGTAAGAATAAAAACATCATCCGATTTTCAGTGAATGCTGACATGACGCCACGAGACA
TTGACCATGTGCTCACGGTTTGTCACGAGGCGTACCATCACCCAGAGTTAGAATTCGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

56.589

98.473

0.557