Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA5   Type   Machinery gene
Locus tag   IQE94_RS15410 Genome accession   NZ_CP063659
Coordinates   3268246..3268815 (-) Length   189 a.a.
NCBI ID   WP_223342263.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 7339     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3263246..3273815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQE94_RS15375 (IQE94_15205) minC 3263874..3264617 (+) 744 WP_212720422.1 septum site-determining protein MinC -
  IQE94_RS15380 (IQE94_15210) minD 3264683..3265483 (+) 801 WP_190598688.1 septum site-determining protein MinD -
  IQE94_RS15385 (IQE94_15215) minE 3265541..3265831 (+) 291 WP_212720420.1 cell division topological specificity factor MinE -
  IQE94_RS15390 (IQE94_15220) - 3265844..3266029 (+) 186 WP_212720418.1 hypothetical protein -
  IQE94_RS15395 (IQE94_15225) - 3266010..3266945 (-) 936 WP_212720410.1 PilW family protein -
  IQE94_RS15400 (IQE94_15230) - 3266957..3267514 (-) 558 WP_223342262.1 Tfp pilus assembly protein FimT/FimU -
  IQE94_RS15405 (IQE94_15235) - 3267628..3268191 (-) 564 WP_212720406.1 Tfp pilus assembly protein FimT/FimU -
  IQE94_RS15410 (IQE94_15240) pilA/pilA5 3268246..3268815 (-) 570 WP_223342263.1 type II secretion system protein J Machinery gene
  IQE94_RS15415 (IQE94_15245) - 3268940..3270106 (-) 1167 WP_223342264.1 DUF58 domain-containing protein -
  IQE94_RS15420 (IQE94_15250) - 3270188..3270685 (-) 498 WP_212720395.1 hypothetical protein -
  IQE94_RS15425 (IQE94_15255) - 3270675..3271484 (-) 810 WP_212720393.1 DNA methyltransferase -
  IQE94_RS15430 (IQE94_15260) - 3271514..3272017 (-) 504 WP_212720391.1 DNA recombination-mediator protein A -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20414.41 Da        Isoelectric Point: 8.7079

>NTDB_id=496196 IQE94_RS15410 WP_223342263.1 3268246..3268815(-) (pilA/pilA5) [Synechocystis sp. PCC 7339]
MFKAISPSLRPRSALLWSLVCQSPPSDNKRSGDGDRGFTMFEVLIALMISFLFLTGTLNAMVMATVMRVKAERQAQAGYW
IKEDLERVRALADSYKDQSGCPTGVGTAFRDANNSGDANLDNNGLASLPAPANRTILGRTASLTRTPTVSGNVLQLNYIV
RNIEITDTNKSILASLYTEVLPAAALTCP

Nucleotide


Download         Length: 570 bp        

>NTDB_id=496196 IQE94_RS15410 WP_223342263.1 3268246..3268815(-) (pilA/pilA5) [Synechocystis sp. PCC 7339]
ATGTTCAAGGCTATTTCACCCTCATTGCGACCCCGCAGTGCCTTGCTGTGGAGTTTGGTTTGTCAGTCCCCACCATCTGA
TAACAAACGTAGTGGCGATGGCGATCGGGGATTCACCATGTTTGAAGTGCTGATTGCTTTGATGATTTCCTTTTTGTTTC
TGACGGGAACCCTCAATGCCATGGTGATGGCAACGGTAATGCGGGTTAAAGCAGAAAGACAAGCCCAAGCTGGCTATTGG
ATCAAAGAAGATTTGGAAAGAGTTAGGGCTTTAGCTGACAGCTATAAAGATCAGAGTGGATGCCCAACTGGAGTGGGTAC
AGCCTTTCGTGATGCCAATAATAGTGGTGATGCCAACCTCGACAACAATGGTCTTGCGAGTCTGCCCGCTCCAGCAAATC
GAACAATTTTGGGAAGAACAGCAAGTTTAACTCGGACTCCTACCGTTTCCGGCAATGTTCTTCAGCTTAACTACATTGTG
AGGAACATTGAAATTACAGATACAAACAAAAGTATTCTTGCCAGTCTTTACACCGAAGTTCTTCCGGCCGCCGCTCTTAC
CTGTCCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA5 Synechocystis sp. PCC 6803

72.848

79.894

0.582