Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IQE94_RS12905 Genome accession   NZ_CP063659
Coordinates   2722445..2723122 (+) Length   225 a.a.
NCBI ID   WP_212721217.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 7339     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2717445..2728122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQE94_RS12890 (IQE94_12760) gnd 2718286..2719713 (-) 1428 WP_370630476.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  IQE94_RS12895 (IQE94_12765) - 2719962..2721167 (+) 1206 WP_212721224.1 SGNH/GDSL hydrolase family protein -
  IQE94_RS12900 (IQE94_12770) - 2721260..2722396 (+) 1137 WP_212721218.1 cysteine desulfurase family protein -
  IQE94_RS12905 (IQE94_12775) comF 2722445..2723122 (+) 678 WP_212721217.1 ComF family protein Machinery gene
  IQE94_RS12910 (IQE94_12780) - 2723209..2723823 (+) 615 WP_212721216.1 L,D-transpeptidase -
  IQE94_RS12915 (IQE94_12785) - 2723955..2724110 (+) 156 WP_223342090.1 DUF433 domain-containing protein -
  IQE94_RS12920 (IQE94_12790) - 2724126..2724770 (-) 645 WP_212721215.1 Uma2 family endonuclease -
  IQE94_RS12925 (IQE94_12795) - 2724859..2724999 (-) 141 WP_223342091.1 hypothetical protein -
  IQE94_RS12930 (IQE94_12800) bchB 2725314..2726840 (+) 1527 WP_212721211.1 ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit B -
  IQE94_RS12935 (IQE94_12805) - 2727039..2727719 (+) 681 WP_212721209.1 TrkA family potassium uptake protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25744.67 Da        Isoelectric Point: 10.7206

>NTDB_id=496195 IQE94_RS12905 WP_212721217.1 2722445..2723122(+) (comF) [Synechocystis sp. PCC 7339]
MWQSIRSLLFQTPCPLCQKPSQDNFCRDCTGQILSHRFPSNLRQWQGKFPRFVWGQYEGQLRRVLTVMKFEQQPGIGLWL
GEQLAEQWLQQPQAKLKITPQVVPIPLSNRKQAERGFNQAERIAVGFCRLTGYTLRSQALQRPKDTQALFGLSPGDRQRE
LQSALATGPGFNTRQPWLILDDIITTGTTALEARRVMEEKGAKVWGIVAIATPSFSQPMELRQHR

Nucleotide


Download         Length: 678 bp        

>NTDB_id=496195 IQE94_RS12905 WP_212721217.1 2722445..2723122(+) (comF) [Synechocystis sp. PCC 7339]
ATGTGGCAATCAATTCGTTCCCTCTTGTTTCAAACTCCTTGTCCTCTTTGTCAAAAACCTAGTCAAGATAATTTTTGTCG
GGATTGCACTGGACAAATTTTGAGCCACCGTTTTCCCTCTAACCTTCGGCAATGGCAAGGAAAATTTCCCCGCTTTGTTT
GGGGCCAGTACGAAGGGCAACTGCGGCGAGTTTTAACGGTCATGAAGTTTGAGCAACAACCCGGCATTGGCCTCTGGTTG
GGAGAGCAGTTGGCAGAACAATGGTTACAACAACCCCAAGCTAAACTTAAAATAACTCCCCAGGTGGTGCCTATTCCCCT
TAGCAATCGCAAACAGGCTGAACGGGGATTTAACCAAGCGGAAAGAATTGCCGTCGGTTTTTGCCGCCTCACAGGTTATA
CCCTGCGCTCTCAGGCTTTACAACGGCCCAAGGATACCCAAGCGTTGTTTGGTCTTAGCCCCGGCGATCGCCAACGGGAA
TTGCAGTCTGCCCTCGCTACGGGGCCAGGGTTTAACACTCGCCAGCCTTGGTTAATTTTGGATGATATTATTACCACCGG
CACCACCGCCCTAGAAGCCCGACGGGTCATGGAAGAAAAGGGAGCTAAAGTGTGGGGCATCGTGGCGATCGCCACACCGT
CTTTTTCCCAGCCCATGGAACTTAGACAGCATCGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Synechocystis sp. PCC 6803

87.5

99.556

0.871