Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   IQE94_RS09270 Genome accession   NZ_CP063659
Coordinates   1959565..1962180 (+) Length   871 a.a.
NCBI ID   WP_223341792.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 7339     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1954565..1967180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQE94_RS09250 (IQE94_09150) - 1955090..1957000 (+) 1911 WP_223341790.1 long-chain fatty acid--CoA ligase -
  IQE94_RS09255 (IQE94_09155) - 1957143..1958309 (+) 1167 WP_223341791.1 response regulator -
  IQE94_RS09260 (IQE94_09160) pilH 1958518..1958883 (+) 366 WP_190596709.1 response regulator transcription factor Machinery gene
  IQE94_RS09265 (IQE94_09165) - 1958943..1959494 (+) 552 WP_212717708.1 chemotaxis protein CheW -
  IQE94_RS09270 (IQE94_09170) pilJ 1959565..1962180 (+) 2616 WP_223341792.1 methyl-accepting chemotaxis protein Machinery gene
  IQE94_RS09275 (IQE94_09175) - 1962271..1963062 (+) 792 WP_194016605.1 ABC transporter permease -
  IQE94_RS09280 (IQE94_09180) - 1963180..1963431 (+) 252 WP_190596692.1 TatA/E family twin arginine-targeting protein translocase -
  IQE94_RS09285 (IQE94_09185) - 1963747..1965141 (+) 1395 WP_212717720.1 sensor domain-containing diguanylate cyclase -
  IQE94_RS09290 (IQE94_09190) - 1965203..1965370 (+) 168 WP_212717722.1 hypothetical protein -

Sequence

Protein


Download         Length: 871 a.a.        Molecular weight: 93131.57 Da        Isoelectric Point: 4.0183

>NTDB_id=496187 IQE94_RS09270 WP_223341792.1 1959565..1962180(+) (pilJ) [Synechocystis sp. PCC 7339]
MATETNFSQLYGLAYAAYGQGNYQEASSHIEQLAADFPEDPNVLLLRGHIYVGLEQYALAHQAYQGVIRLSDRQDLIDCA
HQALGQIQEEGTGGNGAKDSFGQDWQSEVDSVDRSMAWETGIFTEDDFGEPTLGSVPTPTNPGMDHPFGRNSGSGSFSTS
GARSYEIENLDWSPEAFTDDLDSDDEQTMMPQTGESTFVVPPAFGEGIADFADLAADVSAAGIGGTEGTEHPQYQAWDGG
DWSEALGLDDPEALSAAPTPTSGNYGGGNNLPSFDAFEEGVDDELSDFNLTDIAPELPDSSLFTQTTGLDMGTVDQVDDT
QGGDAVAHGGNAPPPGMATWLKPEGAATGDLSSATSPFNDRPTSEVDAGFLGWFTNASLFKKQIYMAISSGVFSGFAVLV
LGSIVGLGGTPQDVPAPSGETTTEAPAEGAPAEGQAPSQTPEEEPGKPSLLNLALLTAIATAIGVFLINRLLMQQIKSII
DDLQNQFESIYEGNFNVRAKVRSEDELGALTQRFNYISQVILTATSEAQERAATTEKVREKLQRQVIRLLDDVEGASRGD
LTVQAEVTADELGAVADAFNLTIQNLREIVLQVKNAAKQVNNNCKDSESFARNNSSDALRMAEELAVTLNSVQLMTESIE
RVAENAREAEEVAHTSSLTALKGGEAVERTVGGILQIRETVSETARKVKRLAEASQEISKIVAVISQIASRTNLLALNAS
IQAARAGEAGRGFAIVADEVRQLADRSAKSLKEIEQIVLQIQSETGSVMTAMEEGIQQVIDVTDKSEQSKRALEDIIEVS
NRINTLVRSITADTVKQQENSGAVSNVMQSIELTAQETSQESQRVAGSLQTLVSISRDLLTSVERFRVESR

Nucleotide


Download         Length: 2616 bp        

>NTDB_id=496187 IQE94_RS09270 WP_223341792.1 1959565..1962180(+) (pilJ) [Synechocystis sp. PCC 7339]
ATGGCAACAGAAACCAATTTTTCGCAGCTTTATGGGTTGGCCTACGCCGCCTATGGACAGGGGAATTATCAAGAAGCTTC
TTCCCACATTGAACAATTGGCCGCTGATTTTCCTGAAGATCCCAATGTGCTATTGCTCCGGGGACACATCTATGTCGGCC
TGGAACAATACGCCCTAGCCCACCAAGCTTATCAGGGGGTAATCCGGCTTTCCGATCGCCAAGATTTAATCGACTGTGCT
CACCAGGCCCTGGGGCAAATCCAAGAGGAGGGAACGGGGGGCAACGGAGCGAAAGACTCCTTTGGCCAGGATTGGCAAAG
TGAGGTTGATTCTGTTGACCGTTCCATGGCCTGGGAAACGGGAATATTTACGGAGGATGATTTTGGTGAGCCCACCTTGG
GTAGCGTACCTACCCCCACCAATCCGGGCATGGATCATCCCTTTGGCCGTAACTCTGGATCCGGTTCCTTTAGCACCAGT
GGGGCCAGGAGTTACGAAATTGAAAATCTAGATTGGAGTCCAGAAGCTTTTACCGATGATCTGGACTCGGACGATGAACA
GACCATGATGCCCCAAACCGGTGAATCTACCTTTGTGGTACCTCCGGCTTTCGGTGAAGGGATAGCGGACTTTGCTGATT
TGGCGGCGGATGTCTCAGCGGCGGGTATTGGCGGGACAGAGGGCACCGAACATCCCCAATATCAAGCTTGGGATGGGGGC
GACTGGAGTGAAGCCCTAGGTTTAGACGATCCGGAAGCCCTATCTGCCGCTCCTACCCCCACTTCTGGCAATTACGGCGG
TGGCAACAACTTGCCGAGTTTTGATGCGTTTGAGGAAGGGGTTGACGATGAGTTGTCCGATTTTAACTTGACAGACATTG
CCCCGGAGTTGCCCGATTCTTCCCTCTTTACCCAAACCACCGGTCTGGATATGGGCACTGTGGACCAGGTCGATGACACC
CAAGGCGGTGATGCGGTGGCCCATGGAGGTAATGCCCCACCACCGGGTATGGCTACTTGGCTAAAACCAGAGGGTGCCGC
CACCGGGGATTTATCCAGCGCCACTAGTCCCTTTAATGACCGCCCCACCAGTGAAGTAGATGCGGGTTTTCTCGGTTGGT
TCACCAATGCTTCCCTGTTTAAAAAGCAAATTTACATGGCGATCTCCTCCGGTGTATTTTCCGGGTTCGCTGTGTTGGTA
TTAGGAAGCATAGTGGGCCTGGGGGGAACTCCCCAAGACGTACCTGCTCCTTCAGGGGAAACCACCACCGAAGCTCCGGC
AGAAGGTGCCCCCGCAGAGGGTCAGGCCCCTTCCCAGACCCCAGAGGAAGAACCGGGCAAACCATCCCTCCTCAACCTCG
CCCTCCTCACAGCCATAGCCACGGCGATTGGGGTCTTTTTGATCAATCGACTCCTGATGCAACAGATTAAAAGTATTATC
GACGACCTACAAAATCAGTTTGAATCCATCTACGAAGGCAATTTCAATGTCCGGGCCAAGGTGCGATCAGAGGACGAATT
GGGGGCTTTGACCCAGCGGTTTAACTATATTTCCCAGGTTATTCTCACTGCCACCAGTGAAGCCCAGGAACGGGCTGCCA
CCACCGAAAAAGTGCGGGAGAAGTTGCAACGCCAAGTAATTCGGCTTCTGGACGATGTGGAGGGGGCTTCCCGGGGAGAT
TTGACCGTACAAGCGGAAGTAACCGCGGATGAGTTGGGGGCGGTGGCCGATGCCTTTAACCTGACTATCCAAAATTTGCG
GGAAATTGTCTTGCAGGTAAAAAATGCTGCCAAGCAGGTGAACAATAACTGTAAAGACAGTGAGTCCTTTGCTCGCAATA
ACTCCAGCGATGCCCTACGGATGGCGGAGGAATTGGCTGTCACCCTTAACTCCGTTCAGTTAATGACGGAATCCATTGAA
CGGGTGGCAGAAAACGCCCGGGAAGCGGAGGAAGTGGCCCATACTTCATCTTTGACGGCCCTCAAAGGTGGGGAAGCAGT
GGAAAGAACGGTGGGGGGCATCCTACAAATTCGGGAAACGGTATCGGAAACCGCCCGCAAGGTAAAACGGCTAGCGGAAG
CATCCCAGGAAATTTCCAAAATTGTGGCAGTTATTTCCCAAATTGCCTCCCGGACTAACCTGCTAGCTTTGAACGCTTCC
ATTCAGGCGGCCCGGGCAGGGGAAGCAGGGCGGGGCTTTGCTATCGTTGCAGACGAGGTGCGGCAGTTGGCAGATCGTTC
TGCTAAGTCGTTGAAGGAAATTGAGCAGATCGTTTTGCAGATCCAGAGTGAAACCGGCTCCGTAATGACTGCCATGGAAG
AGGGTATACAACAAGTAATCGACGTGACTGACAAATCGGAACAGTCTAAACGAGCCCTGGAGGATATTATTGAGGTGTCT
AACCGGATTAACACTTTAGTGCGTTCCATTACCGCCGACACCGTCAAACAACAGGAGAATTCCGGGGCAGTGTCCAACGT
CATGCAGTCCATTGAGCTGACCGCCCAAGAAACGTCCCAGGAATCCCAACGGGTGGCAGGATCTTTGCAAACCCTGGTCT
CCATTTCCCGAGATCTGTTAACCTCTGTGGAACGGTTCCGGGTGGAAAGTCGATGA

Domains

Predicted by InterproScan.

HAMP domain (HAMP)

(557-588)

HAMP domain (HAMP)

(475-516)

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(651-832)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

94.374

100

0.944