Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   BJAB0715_RS16050 Genome accession   NC_021733
Coordinates   3349119..3349481 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii BJAB0715     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3344119..3354481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJAB0715_RS16040 (BJAB0715_03211) - 3346397..3348475 (-) 2079 WP_000505932.1 methyl-accepting chemotaxis protein -
  BJAB0715_RS16045 (BJAB0715_03212) - 3348522..3349058 (-) 537 WP_000729762.1 chemotaxis protein CheW -
  BJAB0715_RS16050 (BJAB0715_03213) pilH 3349119..3349481 (-) 363 WP_000101096.1 response regulator Machinery gene
  BJAB0715_RS16055 (BJAB0715_03214) pilG 3349505..3349888 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  BJAB0715_RS16060 (BJAB0715_03215) - 3350171..3350809 (+) 639 WP_038346630.1 hypothetical protein -
  BJAB0715_RS16065 (BJAB0715_03216) - 3350869..3351987 (+) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=49607 BJAB0715_RS16050 WP_000101096.1 3349119..3349481(-) (pilH) [Acinetobacter baumannii BJAB0715]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=49607 BJAB0715_RS16050 WP_000101096.1 3349119..3349481(-) (pilH) [Acinetobacter baumannii BJAB0715]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392

Multiple sequence alignment