Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IQS19_RS09285 Genome accession   NZ_CP063503
Coordinates   1943063..1943692 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EH09-18-41     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1938063..1948692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQS19_RS09265 (IQS19_09265) ycbZ 1938464..1940224 (-) 1761 WP_000156518.1 Lon protease family protein -
  IQS19_RS09270 (IQS19_09270) matP 1940410..1940862 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  IQS19_RS09275 (IQS19_09275) ompA 1940938..1941978 (-) 1041 WP_000750416.1 porin OmpA -
  IQS19_RS09280 (IQS19_09280) sulA 1942335..1942844 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  IQS19_RS09285 (IQS19_09285) sxy/tfoX 1943063..1943692 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  IQS19_RS09290 (IQS19_09290) yccS 1943655..1945817 (-) 2163 WP_000875061.1 YccS family putative transporter -
  IQS19_RS09295 (IQS19_09295) yccF 1945827..1946273 (-) 447 WP_089075149.1 YccF domain-containing protein -
  IQS19_RS09300 (IQS19_09300) helD 1946396..1948450 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=495967 IQS19_RS09285 WP_000839153.1 1943063..1943692(+) (sxy/tfoX) [Escherichia coli strain EH09-18-41]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=495967 IQS19_RS09285 WP_000839153.1 1943063..1943692(+) (sxy/tfoX) [Escherichia coli strain EH09-18-41]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1