Detailed information NTG0495963

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: KIM00_RS27940
• Genome accession: NZ_CP074946
• Coordinates: 5424220..5425245 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain 05_3471
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 5419220..5430245

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KIM00_RS27925 (KIM00_27535)	-	5419344..5421291 (-)	1948	Protein_5465	DUF6531 domain-containing protein	-
KIM00_RS27930 (KIM00_27540)	rpmE	5421451..5421663 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
KIM00_RS27935 (KIM00_27545)	priA	5421866..5424064 (+)	2199	WP_001341957.1	primosomal protein N'	Machinery gene
KIM00_RS27940 (KIM00_27550)	cytR	5424220..5425245 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
KIM00_RS27945 (KIM00_27555)	ftsN	5425337..5426296 (+)	960	WP_000068834.1	cell division protein FtsN	-
KIM00_RS27950 (KIM00_27560)	hslV	5426389..5426919 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
KIM00_RS27955 (KIM00_27565)	hslU	5426929..5428260 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
KIM00_RS27960 (KIM00_27570)	menA	5428327..5429253 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
KIM00_RS27965 (KIM00_27575)	rraA	5429346..5429831 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
KIM00_RS27970 (KIM00_27580)	zapB	5429916..5430161 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=495963 KIM00_RS27940 WP_000644904.1 5424220..5425245(+) (cytR) [Escherichia coli strain 05_3471]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=495963 KIM00_RS27940 WP_000644904.1 5424220..5425245(+) (cytR) [Escherichia coli strain 05_3471]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628