Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IQS14_RS12440 Genome accession   NZ_CP063492
Coordinates   2619523..2620152 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EF5-18-41     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2614523..2625152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQS14_RS12420 (IQS14_12420) ycbZ 2614925..2616685 (-) 1761 WP_000156482.1 Lon protease family protein -
  IQS14_RS12425 (IQS14_12425) matP 2616871..2617323 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  IQS14_RS12430 (IQS14_12430) ompA 2617399..2618439 (-) 1041 WP_001309394.1 porin OmpA -
  IQS14_RS12435 (IQS14_12435) sulA 2618795..2619304 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  IQS14_RS12440 (IQS14_12440) sxy/tfoX 2619523..2620152 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  IQS14_RS12445 (IQS14_12445) yccS 2620115..2622277 (-) 2163 WP_000875041.1 YccS family putative transporter -
  IQS14_RS12450 (IQS14_12450) yccF 2622287..2622733 (-) 447 WP_001261235.1 YccF domain-containing protein -
  IQS14_RS12455 (IQS14_12455) helD 2622856..2624910 (+) 2055 WP_001305911.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=495923 IQS14_RS12440 WP_000839153.1 2619523..2620152(+) (sxy/tfoX) [Escherichia coli strain EF5-18-41]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=495923 IQS14_RS12440 WP_000839153.1 2619523..2620152(+) (sxy/tfoX) [Escherichia coli strain EF5-18-41]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1