Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IQS15_RS00840 Genome accession   NZ_CP063487
Coordinates   160523..161152 (-) Length   209 a.a.
NCBI ID   WP_072712306.1    Uniprot ID   -
Organism   Escherichia coli strain EF7-18-51     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 155523..166152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQS15_RS00825 (IQS15_00825) helD 155765..157819 (-) 2055 WP_001295354.1 DNA helicase IV -
  IQS15_RS00830 (IQS15_00830) yccF 157942..158388 (+) 447 WP_001261235.1 YccF domain-containing protein -
  IQS15_RS00835 (IQS15_00835) yccS 158398..160560 (+) 2163 WP_000875061.1 YccS family putative transporter -
  IQS15_RS00840 (IQS15_00840) sxy/tfoX 160523..161152 (-) 630 WP_072712306.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  IQS15_RS00845 (IQS15_00845) sulA 161371..161880 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  IQS15_RS00850 (IQS15_00850) ompA 162237..163277 (+) 1041 WP_000750416.1 porin OmpA -
  IQS15_RS00855 (IQS15_00855) matP 163353..163805 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  IQS15_RS00860 (IQS15_00860) ycbZ 163991..165751 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24146.03 Da        Isoelectric Point: 9.4081

>NTDB_id=495891 IQS15_RS00840 WP_072712306.1 160523..161152(-) (sxy/tfoX) [Escherichia coli strain EF7-18-51]
MKSLSYKRIYKSQQYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=495891 IQS15_RS00840 WP_072712306.1 160523..161152(-) (sxy/tfoX) [Escherichia coli strain EF7-18-51]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAACAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995