Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   BJAB0715_RS08925 Genome accession   NC_021733
Coordinates   1871910..1872545 (+) Length   211 a.a.
NCBI ID   WP_000264035.1    Uniprot ID   -
Organism   Acinetobacter baumannii BJAB0715     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1866910..1877545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJAB0715_RS08900 (BJAB0715_01779) - 1867750..1868763 (+) 1014 WP_020753085.1 phosphotransferase -
  BJAB0715_RS08905 (BJAB0715_01780) murU 1868763..1869452 (+) 690 WP_000646456.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  BJAB0715_RS08910 (BJAB0715_01781) rsmG 1869540..1870172 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  BJAB0715_RS08915 (BJAB0715_01782) - 1870194..1870976 (+) 783 WP_000057212.1 ParA family protein -
  BJAB0715_RS08920 (BJAB0715_01783) - 1870973..1871860 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  BJAB0715_RS08925 (BJAB0715_01784) exbB 1871910..1872545 (+) 636 WP_000264035.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  BJAB0715_RS08930 (BJAB0715_01785) - 1872561..1872989 (+) 429 WP_000669683.1 biopolymer transporter ExbD -
  BJAB0715_RS08935 (BJAB0715_01786) msbA 1872986..1874713 (+) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  BJAB0715_RS08940 (BJAB0715_01787) lpxK 1874716..1875726 (+) 1011 WP_020753086.1 tetraacyldisaccharide 4'-kinase -
  BJAB0715_RS08945 (BJAB0715_01788) kdsB 1875736..1876497 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  BJAB0715_RS08950 (BJAB0715_01789) - 1876509..1877489 (+) 981 WP_038346636.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23211.10 Da        Isoelectric Point: 6.4861

>NTDB_id=49585 BJAB0715_RS08925 WP_000264035.1 1871910..1872545(+) (exbB) [Acinetobacter baumannii BJAB0715]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=49585 BJAB0715_RS08925 WP_000264035.1 1871910..1872545(+) (exbB) [Acinetobacter baumannii BJAB0715]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393

Multiple sequence alignment