Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IQS24_RS08120 Genome accession   NZ_CP063473
Coordinates   1690648..1691277 (+) Length   209 a.a.
NCBI ID   WP_205595650.1    Uniprot ID   -
Organism   Escherichia coli strain EM18-18-42     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1685648..1696277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQS24_RS08100 (IQS24_08100) ycbZ 1686037..1687797 (-) 1761 WP_000156518.1 Lon protease family protein -
  IQS24_RS08105 (IQS24_08105) matP 1687983..1688435 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  IQS24_RS08110 (IQS24_08110) ompA 1688511..1689563 (-) 1053 WP_160528159.1 porin OmpA -
  IQS24_RS08115 (IQS24_08115) sulA 1689920..1690429 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  IQS24_RS08120 (IQS24_08120) sxy/tfoX 1690648..1691277 (+) 630 WP_205595650.1 TfoX/Sxy family DNA transformation protein Regulator
  IQS24_RS08125 (IQS24_08125) yccS 1691240..1693402 (-) 2163 WP_000875015.1 YccS family putative transporter -
  IQS24_RS08130 (IQS24_08130) yccF 1693412..1693858 (-) 447 WP_001261235.1 YccF domain-containing protein -
  IQS24_RS08135 (IQS24_08135) helD 1693981..1696035 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24134.96 Da        Isoelectric Point: 9.2180

>NTDB_id=495806 IQS24_RS08120 WP_205595650.1 1690648..1691277(+) (sxy/tfoX) [Escherichia coli strain EM18-18-42]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGATIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=495806 IQS24_RS08120 WP_205595650.1 1690648..1691277(+) (sxy/tfoX) [Escherichia coli strain EM18-18-42]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCACTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995