Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   IMX18_RS26380 Genome accession   NZ_CP063456
Coordinates   5730216..5730617 (+) Length   133 a.a.
NCBI ID   WP_003257770.1    Uniprot ID   A0AAI8FHY9
Organism   Pseudomonas shirazica strain A28     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5725216..5735617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMX18_RS26350 - 5725283..5726287 (-) 1005 WP_003257774.1 aspartate carbamoyltransferase catalytic subunit -
  IMX18_RS26355 pyrR 5726300..5726818 (-) 519 WP_015272082.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  IMX18_RS26360 ruvX 5726868..5727305 (-) 438 WP_013974530.1 Holliday junction resolvase RuvX -
  IMX18_RS26365 - 5727305..5727874 (-) 570 WP_015272081.1 YqgE/AlgH family protein -
  IMX18_RS26370 - 5728053..5728958 (-) 906 WP_013974528.1 energy transducer TonB -
  IMX18_RS26375 gshB 5729050..5730003 (-) 954 WP_015272080.1 glutathione synthase -
  IMX18_RS26380 pilG 5730216..5730617 (+) 402 WP_003257770.1 PleD family two-component system response regulator Regulator
  IMX18_RS26385 pilH 5730665..5731030 (+) 366 WP_003257768.1 twitching motility response regulator PilH -
  IMX18_RS26390 - 5731027..5731581 (+) 555 WP_003257767.1 chemotaxis protein CheW -
  IMX18_RS26395 - 5731623..5733647 (+) 2025 WP_224765942.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14576.82 Da        Isoelectric Point: 6.4772

>NTDB_id=495751 IMX18_RS26380 WP_003257770.1 5730216..5730617(+) (pilG) [Pseudomonas shirazica strain A28]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQTCAVIKHNSAFKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFAAAQQHAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=495751 IMX18_RS26380 WP_003257770.1 5730216..5730617(+) (pilG) [Pseudomonas shirazica strain A28]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGACTCGCGCACGATCCGCCGCACCGCACAGATGTTGCTCGGTGAAGC
GGGCTGCGAGGTGATCACCGCCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGACCACCAGCCCAGCATCATCTTCG
TCGATGTGTTGATGCCGCGCCTGGACGGCTACCAGACCTGCGCGGTGATCAAGCACAACAGTGCCTTCAAGGACACCCCG
GTCATTCTGCTGTCGTCACGTGACGGCCTGTTCGACAAGGCCCGCGGCCGGGTGGTCGGCTCCGACCAGTTCCTGACCAA
ACCGTTCAGCAAGGAAGAACTGCTCGACGCGATCCGCGCCCACGTGCCCGGTTTTGCCGCAGCCCAACAACACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70

90.226

0.632