Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IMX18_RS17080 Genome accession   NZ_CP063456
Coordinates   3704782..3705417 (-) Length   211 a.a.
NCBI ID   WP_015269400.1    Uniprot ID   A0A2N5B7G8
Organism   Pseudomonas shirazica strain A28     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3699782..3710417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMX18_RS17050 murB 3700879..3701898 (-) 1020 WP_100413904.1 UDP-N-acetylmuramate dehydrogenase -
  IMX18_RS17055 - 3701895..3702359 (-) 465 WP_003259973.1 low molecular weight protein-tyrosine-phosphatase -
  IMX18_RS17060 kdsB 3702359..3703123 (-) 765 WP_015269402.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IMX18_RS17065 - 3703120..3703305 (-) 186 WP_011532874.1 Trm112 family protein -
  IMX18_RS17070 lpxK 3703350..3704351 (-) 1002 WP_015269401.1 tetraacyldisaccharide 4'-kinase -
  IMX18_RS17075 - 3704351..3704785 (-) 435 WP_013971564.1 biopolymer transporter ExbD -
  IMX18_RS17080 exbB 3704782..3705417 (-) 636 WP_015269400.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IMX18_RS17085 comA 3705819..3708032 (-) 2214 WP_217190301.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IMX18_RS17090 - 3708175..3708687 (+) 513 Protein_3381 DUF2062 domain-containing protein -
  IMX18_RS17095 - 3708691..3709470 (-) 780 WP_015269397.1 ABC transporter permease -
  IMX18_RS17100 - 3709467..3710399 (-) 933 WP_013971560.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22888.17 Da        Isoelectric Point: 7.3616

>NTDB_id=495734 IMX18_RS17080 WP_015269400.1 3704782..3705417(-) (exbB) [Pseudomonas shirazica strain A28]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=495734 IMX18_RS17080 WP_015269400.1 3704782..3705417(-) (exbB) [Pseudomonas shirazica strain A28]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCGCCGCACCTGCTGGGTCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCACTGGGCGAAATCCTTGCCGCCGGTCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAGGAATGCATCGAGGAGGCCGCTTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCTCCGCTGTTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCGGTGTTGGCCGGTGGTATCTCCAAAGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTTGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCAGCGCCGCATCGATGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAGGTGATCCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGTGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N5B7G8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.381

99.526

0.82