Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   KIM03_RS27420 Genome accession   NZ_CP074936
Coordinates   5419206..5420198 (-) Length   330 a.a.
NCBI ID   WP_072164909.1    Uniprot ID   -
Organism   Escherichia coli strain 06_3288     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5414206..5425198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM03_RS27410 (KIM03_27130) yieP 5417098..5417790 (+) 693 WP_032345090.1 FadR/GntR family transcriptional regulator -
  KIM03_RS27415 (KIM03_27135) mdtD 5417813..5419240 (+) 1428 WP_001280838.1 multidrug transporter subunit MdtD -
  KIM03_RS27420 (KIM03_27140) cytR 5419206..5420198 (-) 993 WP_072164909.1 ribose operon transcriptional repressor RbsR Regulator
  KIM03_RS27425 (KIM03_27145) rbsK 5420202..5421131 (-) 930 WP_001300603.1 ribokinase -
  KIM03_RS27430 (KIM03_27150) rbsB 5421257..5422147 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  KIM03_RS27435 (KIM03_27155) rbsC 5422172..5423137 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  KIM03_RS27440 (KIM03_27160) rbsA 5423142..5424647 (-) 1506 WP_000387752.1 ribose ABC transporter ATP-binding protein RbsA -
  KIM03_RS27445 (KIM03_27165) rbsD 5424655..5425074 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36639.96 Da        Isoelectric Point: 5.2141

>NTDB_id=495731 KIM03_RS27420 WP_072164909.1 5419206..5420198(-) (cytR) [Escherichia coli strain 06_3288]
MATMKDVARLVGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=495731 KIM03_RS27420 WP_072164909.1 5419206..5420198(-) (cytR) [Escherichia coli strain 06_3288]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGTGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGAGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361