Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IP586_RS27385 Genome accession   NZ_CP063455
Coordinates   6025037..6026404 (-) Length   455 a.a.
NCBI ID   WP_025129215.1    Uniprot ID   -
Organism   Pseudomonas protegens strain PC-578039     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6020037..6031404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IP586_RS27360 yjiA 6020237..6021208 (-) 972 WP_102865429.1 GTPase -
  IP586_RS27365 - 6021323..6021520 (-) 198 WP_007937254.1 YbdD/YjiX family protein -
  IP586_RS27370 - 6021537..6023603 (-) 2067 WP_102882272.1 carbon starvation CstA family protein -
  IP586_RS27375 - 6023890..6024258 (+) 369 WP_267268943.1 PilZ domain-containing protein -
  IP586_RS27380 - 6024275..6025003 (-) 729 WP_375538621.1 hypothetical protein -
  IP586_RS27385 radA 6025037..6026404 (-) 1368 WP_025129215.1 DNA repair protein RadA Machinery gene
  IP586_RS27390 - 6026450..6027010 (-) 561 WP_102882274.1 ankyrin repeat domain-containing protein -
  IP586_RS27395 - 6027078..6028619 (-) 1542 WP_267268944.1 catalase -
  IP586_RS27400 mscL 6028907..6029320 (+) 414 WP_102882276.1 large-conductance mechanosensitive channel protein MscL -
  IP586_RS27405 - 6029368..6030144 (-) 777 WP_102865423.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48756.27 Da        Isoelectric Point: 7.1317

>NTDB_id=495722 IP586_RS27385 WP_025129215.1 6025037..6026404(-) (radA) [Pseudomonas protegens strain PC-578039]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMIESGGAAAPAGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLKIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=495722 IP586_RS27385 WP_025129215.1 6025037..6026404(-) (radA) [Pseudomonas protegens strain PC-578039]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCTCCACCTTTCCCAAATGGGCCGGGCAATGTGGCGAGTG
CGGGGCCTGGAACACCCTGACCGAGACCATGATCGAAAGCGGTGGTGCCGCGGCTCCCGCCGGGCGCACTGGCTGGGCCG
GGCAACAGGCGCAGATCAAGACCCTGGCAGAAGTCAGCGTCGAGGAAATTCCACGTTTCTCCACCGCTTCCGGCGAACTC
GACCGAGTGCTGGGCGGCGGCCTGGTGGACGGCTCGGTGGTGCTGATCGGTGGTGATCCGGGGATCGGCAAGTCGACCAT
CCTGCTGCAGACCCTGTGCAACATCGCCACGCGCATGCCGGCCTTGTACGTCACCGGCGAGGAGTCTCAGCAGCAGGTGG
CGATGCGCGCCCGGCGCCTGGGCCTGCCCCAGGATCAGTTGCGGGTGATGACCGAGACCTGCATCGAAACCATCATCGCC
ACCGCTCGGGTGGAAAAACCCAAGGTCATGGTGATCGACTCGATCCAGACCATCTTCACCGAACAGCTGCAATCGGCTCC
GGGCGGCGTGTCCCAGGTGCGCGAGAGCGCCGCCTTGCTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATTTTCCTGG
TGGGCCACGTGACCAAGGAAGGCGCCCTGGCCGGGCCGCGGGTGCTGGAGCACATGGTCGACACCGTGCTGTATTTCGAG
GGCGAGTCTGACGGTCGCCTGCGGTTGCTGCGGGCGGTGAAGAACCGTTTTGGTGCGGTCAATGAGCTGGGTGTGTTCGG
CATGACCGACCGCGGTCTGAAGGAGGTGTCCAACCCTTCGGCGATTTTCCTCACTCGAGCTCAGGAAGAAGTGCCCGGCA
GCGTGGTAATGGCGACCTGGGAGGGGACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCACCTGGCC
AATCCGCGCCGGGTCACCCTGGGCCTGGATCAGAACCGCCTGGCCATGCTGCTGGCGGTGCTGCACCGCCACGGCGGGAT
TCCGACCCATGACCAGGACGTGTTCCTCAACGTGGTGGGTGGGGTCAAGGTGCTGGAAACCGCCTCCGACCTGGCGTTGA
TGGCCGCCGTGATGTCGAGCTTGCGCAATCGTCCGCTGCCCCATGACTTGCTGGTGTTCGGTGAAGTGGGCCTGTCCGGT
GAAGTGCGTCCGGTGCCCAGCGGCCAGGAGCGTTTGAAAGAGGCCGCCAAGCACGGCTTCAAACGGGCCATCGTGCCCAA
GGGCAATGCGCCGAAAGAGTCGCCGCCGGGCTTGAAGATCATTGCCGTGACCCGCCTGGAACAGGCGTTGGATGCGCTCT
TCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus mitis SK321

46.053

100

0.462
  radA Streptococcus mitis NCTC 12261

45.833

100

0.459
  radA Streptococcus pneumoniae Rx1

45.833

100

0.459
  radA Streptococcus pneumoniae D39

45.833

100

0.459
  radA Streptococcus pneumoniae R6

45.833

100

0.459
  radA Streptococcus pneumoniae TIGR4

45.833

100

0.459