Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   IP585_RS02695 Genome accession   NZ_CP063454
Coordinates   614856..615257 (+) Length   133 a.a.
NCBI ID   WP_010955560.1    Uniprot ID   -
Organism   Pseudomonas putida strain PC-578038     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 609856..620257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IP585_RS02665 - 609916..610920 (-) 1005 WP_003249311.1 aspartate carbamoyltransferase catalytic subunit -
  IP585_RS02670 pyrR 610933..611451 (-) 519 WP_014592661.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  IP585_RS02675 ruvX 611501..611926 (-) 426 WP_003249316.1 Holliday junction resolvase RuvX -
  IP585_RS02680 - 611926..612495 (-) 570 WP_003249318.1 YqgE/AlgH family protein -
  IP585_RS02685 - 612667..613572 (-) 906 WP_014592660.1 energy transducer TonB -
  IP585_RS02690 gshB 613664..614617 (-) 954 WP_014592659.1 glutathione synthase -
  IP585_RS02695 pilG 614856..615257 (+) 402 WP_010955560.1 response regulator Regulator
  IP585_RS02700 pilH 615305..615670 (+) 366 WP_014592657.1 twitching motility response regulator PilH -
  IP585_RS02705 - 615667..616221 (+) 555 WP_010955559.1 chemotaxis protein CheW -
  IP585_RS02710 - 616269..618293 (+) 2025 WP_223279128.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14602.85 Da        Isoelectric Point: 6.4772

>NTDB_id=495688 IP585_RS02695 WP_010955560.1 614856..615257(+) (pilG) [Pseudomonas putida strain PC-578038]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQTCAVIKHNSAFKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFAAPQQHAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=495688 IP585_RS02695 WP_010955560.1 614856..615257(+) (pilG) [Pseudomonas putida strain PC-578038]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGTGAAGC
GGGCTGCGAGGTGATCACCGCCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGACCATCAGCCCAGTATCATTTTCG
TCGATGTGTTGATGCCACGCCTGGACGGCTACCAGACCTGCGCGGTAATCAAGCACAACAGTGCCTTCAAGGACACCCCG
GTTATCCTGCTGTCGTCCCGCGATGGCCTGTTTGACAAGGCCCGTGGCCGGGTGGTCGGTTCCGATCAATTCCTGACCAA
GCCGTTCAGCAAGGAAGAACTGCTCGACGCGATCCGCGCCCATGTGCCCGGGTTTGCCGCACCTCAACAACACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70

90.226

0.632