Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   INS04_RS13835 Genome accession   NZ_CP063441
Coordinates   2931748..2932374 (-) Length   208 a.a.
NCBI ID   WP_033145121.1    Uniprot ID   A0A263VSI0
Organism   Enterobacter asburiae strain SD4L     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2926748..2937374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INS04_RS13820 (INS04_13820) helD 2926985..2929039 (-) 2055 WP_193804685.1 DNA helicase IV -
  INS04_RS13825 (INS04_13825) - 2929163..2929609 (+) 447 WP_023311032.1 YccF domain-containing protein -
  INS04_RS13830 (INS04_13830) yccS 2929629..2931791 (+) 2163 WP_033145122.1 YccS family putative transporter -
  INS04_RS13835 (INS04_13835) sxy/tfoX 2931748..2932374 (-) 627 WP_033145121.1 TfoX/Sxy family DNA transformation protein Regulator
  INS04_RS13840 (INS04_13840) sulA 2932592..2933101 (+) 510 WP_033145120.1 SOS-induced cell division inhibitor SulA -
  INS04_RS13845 (INS04_13845) ompA 2933456..2934511 (+) 1056 WP_023311028.1 porin OmpA -
  INS04_RS13850 (INS04_13850) matP 2934578..2935030 (-) 453 WP_193804686.1 macrodomain Ter protein MatP -
  INS04_RS13855 (INS04_13855) - 2935217..2936977 (+) 1761 WP_193804687.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23876.44 Da        Isoelectric Point: 9.4588

>NTDB_id=495657 INS04_RS13835 WP_033145121.1 2931748..2932374(-) (sxy/tfoX) [Enterobacter asburiae strain SD4L]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALGIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=495657 INS04_RS13835 WP_033145121.1 2931748..2932374(-) (sxy/tfoX) [Enterobacter asburiae strain SD4L]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCCCCGTTGGGCGAAATTCATCACCGTGCTCT
GTTTGGAGGCTATACCCTGGCGGTAGATGATGCGGTGTTTGCCATGGTGTCAGACGGCGAACTTTATCTTCGCGCCTGTG
AGGAGAGTGCGAAATACTGTGTAAAAAATGCCTCCTCTTTTTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TACTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCGCTTAGTGCGGCAAG
AAAAGAGCGCTATCAGCGCCATCAACGAAACCGCTTAAAGGATCTGCCAAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
TTGAAGCTGGCATCACTAATGAGGAAACGCTGCGGGCGCTGGGTGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAAAAC
AAAGCGCTCGGTATTAAGGTTCTCTTTGCGCTGGAAGGGGCTATCGAGGGGCTGCATGAGGCGGCACTCCCGGCAGGTAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A263VSI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567