Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IP582_RS08410 Genome accession   NZ_CP063427
Coordinates   1815777..1816397 (+) Length   206 a.a.
NCBI ID   WP_039078588.1    Uniprot ID   A0A348DGQ5
Organism   Citrobacter sp. BDA59-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1810777..1821397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IP582_RS08390 (IP582_08390) - 1811178..1812938 (-) 1761 WP_193795631.1 Lon protease family protein -
  IP582_RS08395 (IP582_08395) matP 1813122..1813574 (+) 453 WP_047371001.1 macrodomain Ter protein MatP -
  IP582_RS08400 (IP582_08400) ompA 1813648..1814691 (-) 1044 WP_193795632.1 porin OmpA -
  IP582_RS08405 (IP582_08405) sulA 1815058..1815558 (-) 501 WP_193795633.1 SOS-induced cell division inhibitor SulA -
  IP582_RS08410 (IP582_08410) sxy/tfoX 1815777..1816397 (+) 621 WP_039078588.1 TfoX/Sxy family DNA transformation protein Regulator
  IP582_RS08415 (IP582_08415) yccS 1816394..1818523 (-) 2130 WP_193795634.1 YccS family putative transporter -
  IP582_RS08420 (IP582_08420) - 1818540..1818986 (-) 447 WP_039078590.1 YccF domain-containing protein -
  IP582_RS08425 (IP582_08425) helD 1819110..1821164 (+) 2055 WP_193795635.1 DNA helicase IV -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23777.52 Da        Isoelectric Point: 9.8088

>NTDB_id=495606 IP582_RS08410 WP_039078588.1 1815777..1816397(+) (sxy/tfoX) [Citrobacter sp. BDA59-3]
MKNISYQRIYQSREYLAPLGKIRFRAHFGGYSLSIDNTVFAMISEGELYLRACEESAQYRVTRSSPLLTIQKRGRAVSLN
YYFVDEHLWRDLPTLLRLSSQSLAAAREEKAARDTPHRLKDLPNISFQLEMMLFDAGIPDERMLRHLGAKACWLRLKALN
KHMGIKVLLGLEGAIIGLHEAALPALRRQELIDWYHEVGQKKNQDH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=495606 IP582_RS08410 WP_039078588.1 1815777..1816397(+) (sxy/tfoX) [Citrobacter sp. BDA59-3]
ATGAAAAACATATCCTATCAAAGGATCTATCAGTCCCGGGAATACCTCGCACCTTTGGGGAAAATTCGCTTTCGCGCGCA
TTTTGGTGGCTACAGCTTATCGATAGACAACACCGTGTTTGCGATGATTTCAGAAGGAGAGTTATACCTGCGTGCCTGTG
AGGAGAGCGCGCAATATCGGGTAACGCGAAGTTCACCTCTTCTGACAATCCAGAAGCGTGGCCGCGCTGTTTCACTTAAC
TACTACTTTGTGGATGAGCATCTCTGGCGTGACTTGCCAACATTGTTGCGGCTTTCATCACAATCGCTCGCGGCGGCCCG
GGAGGAAAAAGCGGCGCGAGATACGCCTCATCGCCTTAAGGACCTTCCAAACATAAGCTTTCAACTTGAGATGATGCTTT
TTGACGCAGGTATACCAGACGAACGTATGCTGCGGCATCTGGGCGCCAAAGCGTGTTGGTTGCGTTTGAAGGCGTTGAAC
AAACACATGGGCATCAAGGTGCTGCTGGGTCTGGAAGGCGCGATCATTGGGCTGCATGAAGCCGCGCTCCCGGCGTTGAG
ACGCCAGGAGTTAATCGACTGGTACCACGAGGTGGGTCAGAAAAAAAACCAGGATCATTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A348DGQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.406

98.058

0.583