Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IP581_RS07975 Genome accession   NZ_CP063425
Coordinates   1724267..1724887 (+) Length   206 a.a.
NCBI ID   WP_086871969.1    Uniprot ID   -
Organism   Kosakonia pseudosacchari strain BDA62-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1719267..1729887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IP581_RS07955 (IP581_07955) - 1719643..1721403 (-) 1761 WP_097400188.1 Lon protease family protein -
  IP581_RS07960 (IP581_07960) matP 1721586..1722038 (+) 453 WP_020457269.1 macrodomain Ter protein MatP -
  IP581_RS07965 (IP581_07965) ompA 1722122..1723171 (-) 1050 WP_086871964.1 porin OmpA -
  IP581_RS07970 (IP581_07970) sulA 1723539..1724048 (-) 510 WP_086871967.1 SOS-induced cell division inhibitor SulA -
  IP581_RS07975 (IP581_07975) sxy/tfoX 1724267..1724887 (+) 621 WP_086871969.1 TfoX/Sxy family DNA transformation protein Regulator
  IP581_RS07980 (IP581_07980) yccS 1724881..1727010 (-) 2130 WP_193822207.1 YccS family putative transporter -
  IP581_RS07985 (IP581_07985) - 1727028..1727474 (-) 447 WP_193822208.1 YccF domain-containing protein -
  IP581_RS07990 (IP581_07990) helD 1727597..1729651 (+) 2055 WP_193822209.1 DNA helicase IV -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23562.27 Da        Isoelectric Point: 9.9602

>NTDB_id=495585 IP581_RS07975 WP_086871969.1 1724267..1724887(+) (sxy/tfoX) [Kosakonia pseudosacchari strain BDA62-3]
MEDLSYQRIYQSREYLMPLGTICHRAHFGGYSLSVDKTVFAMVAEGELYLRACDESAQYTVTQDAPLLVFNKRGRQVSLN
YYFVSESVWRDRPLLLQLSALSLDAARRDKDRRSARKRLRDLPNLTFQLEVQLHEAGVLDAHTLRMLGAKACWLRLRKSN
KHLSAKVLLALEGAIVGLHEAALPAPRRRELMEWFNGVIKKGASPY

Nucleotide


Download         Length: 621 bp        

>NTDB_id=495585 IP581_RS07975 WP_086871969.1 1724267..1724887(+) (sxy/tfoX) [Kosakonia pseudosacchari strain BDA62-3]
ATGGAAGACCTATCTTATCAACGGATATATCAGTCGCGCGAATACCTCATGCCTCTCGGCACAATTTGTCACCGCGCTCA
TTTTGGCGGTTACAGCTTGTCAGTGGATAAAACTGTTTTCGCAATGGTTGCAGAGGGGGAACTCTACCTTCGTGCTTGCG
ACGAGAGTGCGCAATATACGGTTACGCAAGATGCCCCTTTACTGGTATTCAACAAACGTGGGCGTCAGGTTTCGTTAAAT
TACTACTTCGTGAGCGAGAGTGTGTGGCGCGATCGTCCGTTACTTCTGCAACTTTCGGCTCTTTCACTTGATGCTGCGCG
GCGTGATAAAGATCGGCGCAGTGCCAGAAAACGGTTGCGCGATCTGCCTAACCTTACTTTTCAACTTGAAGTTCAACTCC
ATGAAGCTGGTGTACTGGATGCACATACACTGCGAATGCTCGGAGCAAAAGCTTGTTGGCTTAGATTGAGAAAATCAAAC
AAGCATCTAAGCGCGAAAGTGCTTCTTGCACTAGAGGGCGCAATTGTTGGGCTTCACGAAGCGGCGTTACCGGCGCCGCG
ACGCCGGGAACTGATGGAGTGGTTTAACGGTGTAATCAAGAAAGGAGCGAGTCCTTACTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

56.098

99.515

0.558